RNA id: AMCG00006812


Basic Information

Item Value
RNA id AMCG00006812
length 5157
RNA type mRNA
GC content 0.46
exon number 29
gene id AMCG00006812
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 21054940 ~ 21088079 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TAGATCGTCACCACCCGGAAGTGGTGCTTTTGAGTGACTTTCAGTGTCGCCTATGTGTTGTTGGTGTAGGCGTATATTTGAGTGGGATACATGAATTGCACACAGGCGGACGAAAGATTAACTCCCGAGCGCTGTGGACTTGTATTACCCGAATAACACACTGCGATGTAAACACACGTTGCAGACACAGGCACGCCGTCGCAGAGCCGGGGAGCGGTCGCCCGTATTTCATGGTATGGGCAAGAAGAGGAGGTCGAGCTGCTGCACCGTCAGTAATGTCAGATTGAAATCCCTCATCTTGCGGCAAGTGTTTGTAACATAGTACCAGGTGTAGCCATGCCGGGGAAGCTGAAGGTCAGGATTGTTGCTGGGCGGCATTTGCCTGTCATGGACCGGGCCAGTGACCTGACTGATGCTTTTGTAGAGGTGAAATTTGGCaacacaacatttaaaactgatGTATACCCCAAATCTCTCAATCCCCAGTGGAACTCAGAGTGGTTTAAGTTTGAGGTGGATGATGAAGACTTGCAGGATGAGCCGTTACAGATCACTGTTTTGGACCACGACACCTATAGTGCTAATGATGCAATTGGCAAGGTCTATATAGATATTGATCCTCTGCTATCCAGTGAAGCTGCAACTGTGATCTCTGGGTGGTTCCCTATTTATGACACTATACATGGAATACGTGGAGAAATTAATGTCCTAGTGAAGGTGGATCTATTCAATGATTTAAATCGCTTTAGACAATCATCATGTGGAGTCAAATTCTTCTGcactACTTCCATCCCACGGTGCTACAGAGCAGTGATAGTGCATGGATTTGTGGAAGAGCTGGTGGTCAACGAAGACCCAGAGTACCAATGGATAGACAGGATCCGGACCCCCAGAGCGTCGAACGAAGCCCGCCAGAGACTCATCTCCCTGATGTCTGGTGAACTTCAGAGGAAGATCGGTTTGAAGGTGCTGGAAATGGGAGGCAACGCGGTGGTGGGCTACCTGCAGTGTTTTGACCTGGAGGGGGAGTCAGGGCTGGTGGTGCGAGCCATTGGTACCGCCTGTACTCTGGATAAACTAAGTAACCCTTCTGCAGCTCTCCTACCTGCATGCAATTCCCCATCCAAAGACATGAAAGAGTCTCCACTGGCTCACCCGCCCAGCCACGGATGTCGCTCCACCAACAACAGCCCAATTCACACTGCTACCGGCTCACGACTAACTCAGAacttctctgtgtctgttccTACTCTCATCTACACTGTCTTGCTGGCGTCCATTAGCACAGCGTTACTGAATGTGTTTCCACCTTCTTCTGGCAGGGCTCCCTTCAGTGAAGACCCCAACCCTAATACTCATTCATCAGGACCCTCCACCCCACTGAAAAACCAAACCTATTCCTTTTCACCTTCCAAGTCCTACAGCCGACAGTCCTCCTCTTCTGACACAGATTTGAGTTTGACACCTAAAACTGCATTTTTCCCCCTGGGGCCTAGGATTTTCCTGTGTCCTAGTTCCCCTACTCTCTCTTCTGATTCCCCACCTCATACAAACACTATTCAACTCCCCCTGGGGTCTGGGACTGCCCACAGTTATACTCCTCCACAGTCTGGCCATGCAAACCCAGTTTCGCTGAGAAAAACGGTCTCTTTCAGTGAGGAGTTGCTTCTGGCGGCCTCTGTGTTAAAAGTGAATGGAAACTTCATATTGCTTGGCATCTTTGTCCTGGTAGGAATGGGCAGTGGTGGTAGCGTGGGCAAGGAAGGAGGACCTCTAAAAACACTCCTGAGACAACAAACGCAGTCGGCACTCGAGCATAGGGAATTCCCATTTTTCACGTTGACGTGTTTCCCGATGGGATTTCTTGTCCATGTTGGTGGTGTCGTCAGTGCACGGTCAGTCAAGCTTCTGGATCGTATCCACAATCCTGATGAACCTGAAACTCGTGACGCCTGGTGGGAAGAGATCAGACAAGAGATCAAATCTCATGCCAAAGCTCTGGGATGTCACGCTGTGGTTGGTTACAGCGAAACAACAAGCATCTGTGAAGAAGTTTGCATCCTTTCTGCATCTGGCACAGCAGCAGTTCTTAATCCCAAGTTCCTCCAAGATGGCTGCTTGGACAGCTGCAGTGAACACAGGTTGTCAAGGCAGCCTACCTTCTTTTCCACAGGGTCAGAGAAGGGAGAGTTTGATATTTTCCTTCAGAGCAAGGATAGTTCTTCCATGTTAGGATTGGAGGAGCCCTCCCCTCCCAGCTGTGGATTTTGCCATATTCCCTATGACGAGCTGAACATGCCATTCCCCGCACATCTCACGTACTGCTTCAACTGTCGGAGGCAGAAGGTCCCCGATGTGCTCTTCACCACAATGGACCTGCCACTAGAGGCTGCAGTCACTGGAAAGGGGTGTCTCATTCAGGCCAGGTTATGTCGTCTGAAGAAGAAGGCTCAGGGGGAGGCAAATGCCACCGCCATCAGTAACTTGCTTCCCTTCATGGAGTATGAGCTCCACACGCAGCTGATGAACAAGCTCAAACTTCGGGGCATGAACGCACTCTTTGGGCTCAGGATCCAGATCAGTGTTGGGGAGAACATGCTGGTCGGGCTAGCTTCTGCCACAGGGGTGTATTTGACGGCTCTGCCCACTCCTGGGGGGATTCAGATCGCAGGGAAAACGCCAAGTGACATTTCTTATGAGCAGCATATATCAAACATGCAAAAGAAGATCAACGAGACCATCGCCAAAAACAAGGAGCTGTATGAGATAATCCCCCCGGAAAGCATTGACGAAATGATTGGGTCGCCCATACCAGAACCACGCCAGCGTTCCCGGCTCTTCAGATCGCACTCGGAGAGTTCTGATGAGGTGTCAGAACTGGATTTGTCCCATGGCAAGAAGGATGCTTTTGTCCTGGAGATTGATgatgctgatgcagtagaagaTATCCATTCTTTGCTGACTGACGCCCCGCTGCCAACAGGATTCTATAGTTGCAACACAGAGATAATGCCAGGGATTTACAACTGGACATCGGGTGTACAGATGTTTACCTCAGTGAGAGTATTCAGGCTGAACAACACCAATCTGACGAATCAAGGACTCAACAAGATTTTTAATGATCTCTGTGAGAATCTGCTGAAGAGTCTGTATTTTAAGCTGCGCTCCATGATTCCTTGCTGTCTTTGCCATGTGAACTTCGCTGTGGCTGTACCGGAGGATGAACTTATTCAGGTTGCTGTCACTGCAGTCGCAATGACTTTTGACAAAGACCAAGCCCAAGAGAATCTGAAACTTTACGTGGATAAGACACTTATGAAAGTGATCACGGAGAACGAGGAACAGCTGCAGTTCCCGTTAGAGCTGTGTTCAGACTCGCAATCTGGAAACCCCTTCTCTCCCATCAAAGGCACAGGGCTCCAGGAGAACGCAGGCATGCACATAGTCCCCAGTGCTCAGAGAGCCACCTCAGTTGATTACAGTTCCTTTGCAGACAGATGCAGCACCTGGATAGAGCTCATTAAACTGAAAGCTCAGACCATAAGACGAGGATCAATTAAGACAAGTCACTCACGTCTTCGCTCCACGACATCAAACACAGGCTGCACTGTCGCTGTGGTCAAAATGACCCCTCTGTCTTTCATCCCCGGCGCAAAAATTATCAAATATCTTGGCATCATTAATATGTTCTTCATCCGAGAGACCACGTCTTTACGTGAGGAGGGTGGTGTCAGTGGCTTTCTTCATGCGTTCATCGCTGAGGTGTTTGCGATGGTCAGAGCTCACGTCGCAGCGCTGGGCGGAAATGCTGTGGTCTCCTACATAATGAAGGAGTGCGTTTTCATGGAAAATCCAAACAAGAATCAGGCGCAGTGCCTTATAAACGTAAGCGGTGACGCAGTGATTTTTGTGAGAGAGTGTGACCTGGAAGCCCTGCCTGTACAGCCACAGACGTCCGCAGCACAGACTTCCAGCAGTGGAGGAGAAGTTCCCGCCTGAAGACCAGACTTCCTATTGGGCATCTAAATGAAAAGCAGTTCAGAGTTGTGGCTGCCTTAAATCCACATTGCTTCCAAGTTTAACACTCTTCTTCCCTTATAACCTGTAACCTCTTACAGAGGCCGAAATGGTGCCGATATATGCAGGGCTTATGAGGTGGGAATTTAGACTTATtagtatgtgtatttaaaaaaaaaaaaatactcaaaaagcttccttatttttttagtttagatTGTAGACATTCCACTGTCTAGGCAGCTGCGTAGGCATCTTCAATATTCCATTAAAGACGTCCAGCGTTGAAACAGCTGATGCTTTATGTTGCGATATTGTCCTATAATAGTTCAGATTTTTATagaagctctttttttttttttttttttttcagcaaacTTGGTTAAgaacaatgcaaaaataaagggGTTAGGGGTAAATAAATCTAGCACACAACAGGGTTTTGTTATcttttgcttctttgtttttaaagtatctTTAAAAACGGGTGTCACGGTAACTTCCCAGTTCTTTGTTCCTTGACTGTTTCACTGCTCACGGAACAACGTTCAGTGAAAGGCCACCACACAGCGGGACTTGTCGTGAACTGAAATGCTTACTGGTTATTTTTATAGCCAGGTACATATTGCTGTCGAGTTGGTAAAAAGCTTTACAGGAACCTAAGTCATGTGGTTCCAATAGCAGATTGCTTACTTCCTTGAAATCTCATGAATTTGTGTACTACTGAAccttgatatttttaaatgatgtaaaatGCTGGAAATTCTTACTGCAGTAAGTTTTTCATATAGGTGCCACAGAaacattttgtgtaaatgtgtactAAAATCAGATtggtatttttgtaattatggagtaattaatttgaatacagtACATATGTTGCATGTGTATGTGCAATTTAATCATAAggtttgcatttgtattacatGTATGAGGTGTTGGTACATAGTGAATATATGTGTTGCTTAAGGTAATGCAGGTTCAATCCATTTGAGACTTGAATGTACATATAGAAtatgttgctttgttttaattagcagCATGCTATCCTTTCCATTTGACCtaattatgtgtttattggCTTGAAGATGCTTTGATCTTGCACAATAAAATTATATGTGAAAGATACTATGCTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140975 lncRNA downstream 23068 21024706 ~ 21031872 (-) True G112568
TU140970 lncRNA downstream 37200 21017201 ~ 21017740 (-) True G112563
TU140969 lncRNA downstream 38892 21015373 ~ 21016048 (-) True G112562
TU140964 lncRNA downstream 57411 20997266 ~ 20997529 (-) True G112557
TU140949 lncRNA downstream 90378 20944169 ~ 20964562 (-) True AMCG00006813
TU141004 lncRNA upstream 7262 21095341 ~ 21096308 (-) True G112589
TU141146 lncRNA upstream 722286 21810365 ~ 21853012 (-) True G112705
TU141258 lncRNA upstream 966543 22054622 ~ 22058136 (-) True G112783
TU141271 lncRNA upstream 1059711 22147790 ~ 22148893 (-) False AMCG00006841
TU141291 lncRNA upstream 1169470 22257549 ~ 22257974 (-) True G112809
AMCG00006814 mRNA downstream 6459 21032398 ~ 21048481 (-) True AMCG00006814
AMCG00006813 mRNA downstream 105194 20948876 ~ 20949746 (-) False AMCG00006813
AMCG00006810 mRNA downstream 120725 20919534 ~ 20934215 (-) True AMCG00006810
AMCG00006808 mRNA downstream 210720 20767762 ~ 20844220 (-) True AMCG00006808
AMCG00006806 mRNA downstream 346982 20689392 ~ 20707958 (-) True AMCG00006806
AMCG00006816 mRNA upstream 19131 21107210 ~ 21129674 (-) True AMCG00006816
AMCG00006817 mRNA upstream 75893 21163972 ~ 21172849 (-) True AMCG00006817
AMCG00006819 mRNA upstream 114972 21203051 ~ 21235769 (-) True AMCG00006819
AMCG00006821 mRNA upstream 326241 21414320 ~ 21435187 (-) True AMCG00006821
AMCG00006826 mRNA upstream 471706 21559785 ~ 21593721 (-) True AMCG00006826
TU140946 other downstream 105104 20854057 ~ 20949836 (-) False AMCG00006813
TU140776 other downstream 818734 20235856 ~ 20236206 (-) True G112420
TU140642 other downstream 1419015 19633237 ~ 19635925 (-) False AMCG00006774
TU140430 other downstream 2713730 18339270 ~ 18341210 (-) False AMCG00006754
TU140351 other downstream 3421495 17632891 ~ 17633445 (-) True G112059
TU141596 other upstream 2316096 23404175 ~ 23407207 (-) True G113050
TU142176 other upstream 5411936 26500015 ~ 26500681 (-) True G113530
TU142323 other upstream 6314521 27402600 ~ 27527348 (-) True G113645
TU142485 other upstream 7179183 28267262 ~ 28292598 (-) False G113775
TU142484 other upstream 7203376 28291455 ~ 28292598 (-) True G113775

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00025170 False 4781 mRNA 0.47 27 NC_007129.7 6638726 ~ 6703644 (+)