RNA id: TU140946


Basic Information

Item Value
RNA id TU140946
length 583
RNA type TUCP
GC content 0.49
exon number 5
gene id AMCG00006813
representative False

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 20854057 ~ 20964562 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATATATAAGGGCAGGAAGATCTCCAGATCAATACCTAGCTAGTCACAGTCCATCCAGAGACACTAACTGTGAGGAAACATCCATCTCAAGATGCCAGAACAGACAGAGCTGGTCCACAGATTCAGAGGAATCCCTTTCTCCACCAGAGCCTCCACAGAGCTGCTACAGTCCCTGGATGACTTTGAGGCCAGAGAAGATGATGTTCTGCTAGTGTCTTATCCCAAATCAGGGACACACTGGCTGGCCGAGATCCTGAGGAATCTGTACAACTGCCACACTGAGAACAACACGACCAGCCAGGTGACTCTGACATCGTCTCTGGAGTTCGGAGATCTCTCCAAATTCCAGGAGCTCAGAAACCTCCCCAGCAAGAGGCTCATCCCAACACACCTCAACTGTGACATGGTCCCCGTGCAgttcaaaacaaagaaatgcaagATGATTTATGTGATCAGAAACCACAAGGACACGGCAGTCTCTATGTTCCATTACTATCAACAGAATCCCCACCTGCCCAAGATTGACAAATGGTCAACCTTTCTGGAGATGTTCCTGAAAGGCCAAGTGGTTTATGGTTCCTGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140871 lncRNA downstream 97271 20714083 ~ 20756786 (-) True G112496
TU140858 lncRNA downstream 200398 20651041 ~ 20653659 (-) False AMCG00006807
TU140857 lncRNA downstream 201217 20651041 ~ 20652840 (-) True AMCG00006807
TU140855 lncRNA downstream 204441 20647320 ~ 20649616 (-) False AMCG00006807
TU140765 lncRNA downstream 774646 20078891 ~ 20079411 (-) True G112410
TU140964 lncRNA upstream 47430 20997266 ~ 20997529 (-) True G112557
TU140969 lncRNA upstream 65537 21015373 ~ 21016048 (-) True G112562
TU140970 lncRNA upstream 67365 21017201 ~ 21017740 (-) True G112563
TU140975 lncRNA upstream 74870 21024706 ~ 21031872 (-) True G112568
TU141004 lncRNA upstream 145505 21095341 ~ 21096308 (-) True G112589
AMCG00006808 mRNA downstream 9837 20767762 ~ 20844220 (-) True AMCG00006808
AMCG00006806 mRNA downstream 146099 20689392 ~ 20707958 (-) True AMCG00006806
AMCG00006805 mRNA downstream 187112 20656253 ~ 20666945 (-) True AMCG00006805
AMCG00006807 mRNA downstream 201433 20647874 ~ 20652624 (-) False AMCG00006807
AMCG00006800 mRNA downstream 216453 20627532 ~ 20637604 (-) True AMCG00006800
AMCG00006814 mRNA upstream 82562 21032398 ~ 21048481 (-) True AMCG00006814
AMCG00006812 mRNA upstream 105104 21054940 ~ 21088079 (-) True AMCG00006812
AMCG00006816 mRNA upstream 157374 21107210 ~ 21129674 (-) True AMCG00006816
AMCG00006817 mRNA upstream 214136 21163972 ~ 21172849 (-) True AMCG00006817
AMCG00006819 mRNA upstream 253215 21203051 ~ 21235769 (-) True AMCG00006819
TU140776 other downstream 617851 20235856 ~ 20236206 (-) True G112420
TU140642 other downstream 1218132 19633237 ~ 19635925 (-) False AMCG00006774
TU140430 other downstream 2512847 18339270 ~ 18341210 (-) False AMCG00006754
TU140351 other downstream 3220612 17632891 ~ 17633445 (-) True G112059
TU139946 other downstream 5100822 15752821 ~ 15753235 (-) True G111767
TU141596 other upstream 2454339 23404175 ~ 23407207 (-) True G113050
TU142176 other upstream 5550179 26500015 ~ 26500681 (-) True G113530
TU142323 other upstream 6452764 27402600 ~ 27527348 (-) True G113645
TU142485 other upstream 7317426 28267262 ~ 28292598 (-) False G113775
TU142484 other upstream 7341619 28291455 ~ 28292598 (-) True G113775

Expression Profile