RNA id: TU140949


Basic Information

Item Value
RNA id TU140949
length 955
lncRNA type sense_over
GC content 0.35
exon number 3
gene id AMCG00006813
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 20854057 ~ 20964562 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tttaatagaggtatttttattgttattactaacAATTCAGagtaataaattacaaaatacacattaacaTTAAGTACAAATGTACCCAAAGTtcagtaaatattaaacatgcatAAGAAAGAAGAATGCACATATGATttataaaaccaaaatcaatTTACATTGCAGTCACAAATCCCACAAAAACCCATTCATTGTAACAGATTaatatacagttcatataaNNNNNNNNNNGCCATTACAAGATTTACGTTGAATAAATTAGATAAACTTATTGAACATATCAATTTTGTACAATGAAAAGTCAGTTTTGACATTcgataagaaaatgaaaatgtgcttgacaataataaataatgaaagaacAGCAAAGTGAGTGGATCTGTCCGTCTCCCTCACTGACACTCATATTGAACACGGCTTGCTAATACACTAGAGTTGATCTTCTCTTTAAACAGCACGTCAAACTGGGCGTTCTGCTTGGAGGTGAAATGGTTCTTCCAGTCACCAACGGCacctTCCTAAAGATGAGCTTCCTGTCAGCTGTCAGTGCGCACACTGTGTGGTTTGAATTCACTTTCTCCTTCTCTGCTTTTTCCTTCATTTCACTGAATGATGATTTCTTTGAGATGTCCTTGATTTGATCTTCCGTGACACTGATGTTCAGAAATGAACTGATCTCCTTGACATATGTGGGGAGATCCTGGAAACACAAATTTGACAGTTTAGTTTGTGCTCTTTCATTCCTGGTTCAACTGAACGACATCTGTTGAATGATATTCACTCCTTATTCCAGCTTCTTCCACAACTGTGAAAGAAGAAATCTCATTTCAAACTCACCTTCTTCATGGACTCATAATACAAGAAGAGTGTGTTTTCAtcattttccttcttctccCAGCTGAGGACGTGATCAATCCAGGAACCGTAAACCACTGCAATGTAAAGAAAgaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140871 lncRNA downstream 187383 20714083 ~ 20756786 (-) True G112496
TU140858 lncRNA downstream 290510 20651041 ~ 20653659 (-) False AMCG00006807
TU140857 lncRNA downstream 291329 20651041 ~ 20652840 (-) True AMCG00006807
TU140855 lncRNA downstream 294553 20647320 ~ 20649616 (-) False AMCG00006807
TU140765 lncRNA downstream 864758 20078891 ~ 20079411 (-) True G112410
TU140964 lncRNA upstream 32704 20997266 ~ 20997529 (-) True G112557
TU140969 lncRNA upstream 50811 21015373 ~ 21016048 (-) True G112562
TU140970 lncRNA upstream 52639 21017201 ~ 21017740 (-) True G112563
TU140975 lncRNA upstream 60144 21024706 ~ 21031872 (-) True G112568
TU141004 lncRNA upstream 130779 21095341 ~ 21096308 (-) True G112589
AMCG00006810 mRNA downstream 9954 20919534 ~ 20934215 (-) True AMCG00006810
AMCG00006808 mRNA downstream 99949 20767762 ~ 20844220 (-) True AMCG00006808
AMCG00006806 mRNA downstream 236211 20689392 ~ 20707958 (-) True AMCG00006806
AMCG00006805 mRNA downstream 277224 20656253 ~ 20666945 (-) True AMCG00006805
AMCG00006807 mRNA downstream 291545 20647874 ~ 20652624 (-) False AMCG00006807
AMCG00006814 mRNA upstream 67836 21032398 ~ 21048481 (-) True AMCG00006814
AMCG00006812 mRNA upstream 90378 21054940 ~ 21088079 (-) True AMCG00006812
AMCG00006816 mRNA upstream 142648 21107210 ~ 21129674 (-) True AMCG00006816
AMCG00006817 mRNA upstream 199410 21163972 ~ 21172849 (-) True AMCG00006817
AMCG00006819 mRNA upstream 238489 21203051 ~ 21235769 (-) True AMCG00006819
TU140776 other downstream 707963 20235856 ~ 20236206 (-) True G112420
TU140642 other downstream 1308244 19633237 ~ 19635925 (-) False AMCG00006774
TU140430 other downstream 2602959 18339270 ~ 18341210 (-) False AMCG00006754
TU140351 other downstream 3310724 17632891 ~ 17633445 (-) True G112059
TU139946 other downstream 5190934 15752821 ~ 15753235 (-) True G111767
TU141596 other upstream 2439613 23404175 ~ 23407207 (-) True G113050
TU142176 other upstream 5535453 26500015 ~ 26500681 (-) True G113530
TU142323 other upstream 6438038 27402600 ~ 27527348 (-) True G113645
TU142485 other upstream 7302700 28267262 ~ 28292598 (-) False G113775
TU142484 other upstream 7326893 28291455 ~ 28292598 (-) True G113775

Expression Profile