RNA id: AMCG00006814


Basic Information

Item Value
RNA id AMCG00006814
length 1011
RNA type mRNA
GC content 0.54
exon number 5
gene id AMCG00006814
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 21032398 ~ 21048481 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTGGTGATGTTTCTGAAATGCCCCCGACCCAAGCTGTCCGTGTGGGCTGCGCTGTGCGTCTTTGTGCTCTGCTGGCTCTACATCTTCCCGGGATACAGGCTGCCCAGCGACAAGGAGATTGTCAGTGAAGTCTTGCGGCAGGGCAAAGTGTGGAAGAAAAACCAGACGGGCATCGCAGTCTTCAGGAACCTGCTGACGGACTGCTGTGATCCGAGGAAGCTATTTGCCGTGACAAAACAGAACTCTCCTCTTGGGAAGACCCTCTGGTACGACGGCGAGTTTTATCACTCCCACACCGTCAACAACGATACTTACTCCCTCTTCGTACAGGAAACCCCTCTGCAGCAGCCACTGAAGAAATGCGCGGTTGTTGGCAATGGCGGGATCCTGAAGCACAGCGGCTGTGGGAAAGACATTGACCAGGCAGACTACGTCATGAGGTGCAATCTTCCGCCACTCTCTAAGGATTACACCGATGATGTGGGGACCAAAACACACTTGGTCACTGCTAACCCCAGCATTATTGAAAAGAGattccaAAACCTTCTCTGGTCCAGGAAGGCTTTTGTGGACAACATGAAAGCCTATGGCACCAGTTACATCTATATGCCAGCCTTCTCCATGAAGCCGGGGACCGAACCTTCCCTGCGAGCCTATCACGCGCTGTCCGACATCGCGGCCAACCAGACGGTCCTGTTCGCCAATCCCGACTTCCTGAGGAACGTGGGCAAGTTCTGGAAGAGCAGGGGGATTCATGCCAAACGCCTCTCCACAGGTCTGTTCCTCGTCAGCTTGGCCCTCGGCCTGTGTGAGGAAGTTACTATTTACGGCTTCTGGCCTTTCTCCGTTGACTTGAACGAGAAGTTCATAAGCCATCACTACTACGACAACATCCTGCCCTTCTCTGGATTCCACGCCATGCCAGAGGAGTTCCTGCAGCTTTGGCTCCTCCACAAGAGCGGGACATTACGGATGCGCATCGGCAAGTGTGACGAGGAAGCGAGTTAG

Function

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0097503 sialylation biological_process
GO:0030173 integral component of Golgi membrane cellular_component
GO:0008373 sialyltransferase activity molecular_function

KEGG:

id description
K03371 SIAT8A; alpha-N-acetyl-neuraminate alpha-2,8-sialyltransferase (sialyltransferase 8A)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140975 lncRNA downstream 526 21024706 ~ 21031872 (-) True G112568
TU140970 lncRNA downstream 14658 21017201 ~ 21017740 (-) True G112563
TU140969 lncRNA downstream 16350 21015373 ~ 21016048 (-) True G112562
TU140964 lncRNA downstream 34869 20997266 ~ 20997529 (-) True G112557
TU140949 lncRNA downstream 67836 20944169 ~ 20964562 (-) True AMCG00006813
TU141004 lncRNA upstream 46860 21095341 ~ 21096308 (-) True G112589
TU141146 lncRNA upstream 761884 21810365 ~ 21853012 (-) True G112705
TU141258 lncRNA upstream 1006141 22054622 ~ 22058136 (-) True G112783
TU141271 lncRNA upstream 1099309 22147790 ~ 22148893 (-) False AMCG00006841
TU141291 lncRNA upstream 1209068 22257549 ~ 22257974 (-) True G112809
AMCG00006813 mRNA downstream 82652 20948876 ~ 20949746 (-) False AMCG00006813
AMCG00006810 mRNA downstream 98183 20919534 ~ 20934215 (-) True AMCG00006810
AMCG00006808 mRNA downstream 188178 20767762 ~ 20844220 (-) True AMCG00006808
AMCG00006806 mRNA downstream 324440 20689392 ~ 20707958 (-) True AMCG00006806
AMCG00006805 mRNA downstream 365453 20656253 ~ 20666945 (-) True AMCG00006805
AMCG00006812 mRNA upstream 6459 21054940 ~ 21088079 (-) True AMCG00006812
AMCG00006816 mRNA upstream 58729 21107210 ~ 21129674 (-) True AMCG00006816
AMCG00006817 mRNA upstream 115491 21163972 ~ 21172849 (-) True AMCG00006817
AMCG00006819 mRNA upstream 154570 21203051 ~ 21235769 (-) True AMCG00006819
AMCG00006821 mRNA upstream 365839 21414320 ~ 21435187 (-) True AMCG00006821
TU140946 other downstream 82562 20854057 ~ 20949836 (-) False AMCG00006813
TU140776 other downstream 796192 20235856 ~ 20236206 (-) True G112420
TU140642 other downstream 1396473 19633237 ~ 19635925 (-) False AMCG00006774
TU140430 other downstream 2691188 18339270 ~ 18341210 (-) False AMCG00006754
TU140351 other downstream 3398953 17632891 ~ 17633445 (-) True G112059
TU141596 other upstream 2355694 23404175 ~ 23407207 (-) True G113050
TU142176 other upstream 5451534 26500015 ~ 26500681 (-) True G113530
TU142323 other upstream 6354119 27402600 ~ 27527348 (-) True G113645
TU142485 other upstream 7218781 28267262 ~ 28292598 (-) False G113775
TU142484 other upstream 7242974 28291455 ~ 28292598 (-) True G113775

Expression Profile