RNA id: AMCG00006815


Basic Information

Item Value
RNA id AMCG00006815
length 2355
RNA type mRNA
GC content 0.50
exon number 8
gene id AMCG00006815
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 21088361 ~ 21102151 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCGTGGGACTTGCTCTACTGGCTACTCCAGCATTAATTCTCTTTCCAATGTACAGTCGTTTACTGAGACTATCGCTGAAGAGACTGAGATGGAGGCCGAAGCAGAGGAACAGCAAGAGGATGAAGCTGAACCCGAGCCACCTAAACCTACCCCACCAAAACAGGCTACCCCTGCCCCAGCACCCATGTCAAACATAGGAGAGACTCACGCCAAGATTCTCATGCTGGCCAAGGCGAAGGAGGACCTGGAGACGGAGAAATcggagagggaagaggagaaggTCCGCTATCTGGCTGAACGCGTGCCTCCAGTGCAGTTCTCAGGACTGGATTTAGCCGGTCTACAGAAATTGTGCCGGGAGCTAAATGACATCACTGAGCGTGTGGACGAGGAGCGCTACGACATCGAGGCCAAAGTCATCAAGAACTGTCGGGAGGTGCTCACCTCTGAGGTTGGGGACTGGCGTAAGAATGTGGAGGCTATGTCTGGAATGGAGGGAAGGAAGAAGATGTTTGATGCTGCTGGTGGTGGGCAGATGGATATTGTCTTTCACTTTGTTGCCTCCATCCTGCTGCTGATGCCATTAATAGTGTGGGGGAGGGatgcagaaaagaaagaaaacaatgctttaTTGTGCAGGATTACAAGAGATACTAAGAAGGATTTGTCTGGCCTCAATCTTACAGTAATACCACACAACTTGCCTCTGAACACAGAATACCTGGACCTTTCCCACAACAACATCTCTCGACTCAACAGTGGGGATCTGGCTGCTCTGTCCAACCTCTGCATCCTGAAGTTCACTCACAACCGCTTGGAATACATCTCGCCTACAGTCTTCCCGGACAACTCCAAAATACAGGTGCTCAACATTTCCTACAATTCCCTCAAAAACATCCCAGACTTGGCATTGCCTCAACTAATGATCCTTGACATATCAAGCAACCTgtATCTTGCACTTGGGAGTCCAAACGCTAGGTCAATAAATGCCACAGATTTTGGCCCTTTGCAGGACAAGCCTTTAAAAGAGCTGAGTCTCGGGGATGGTCTTGGGTTAGACAGCTATGAATCAGCTTTGAGGCGGCTTTCTCTGAGAAACAACAAATTTCAAGACTTGGACTTCATCTCCGAGAGGACCCAACAGATGAAGACTCTAGACACACTGGATCTCAGCTTCAACTCCATTAAGCTTAATGGACCTTGTACTTGGTCTCCTCAGCTAACCAGCCTCTCCTTGAGCAATAATGACCTGGGCAACTCTATATTTTCAAACCTTTCCCCTTACATCAGAAGTCTCAATCTTTCCAAGACAGGCATTACAGAGTTGAACCAGGAGGCTCTTTCCTTGCTACCGAACTTAACACATCTCTTTTTGAGCTCCAACACTATAAGGACCCTACCAACTAATCTCTGGGCTCCCAGATTGGAGGTGCTGCACGTGGACCAAAACAACATCCTCACCATGAGCAAACAATCTCTGGGAGGCCTGCGCGGCTTGAAGCAGCTAAAGGCCAGCAATAATCCGTTTAGCTGCACCTGTGATTCATACTGGTTTGTGACTGCTTTCAATAAATCTCTTTTACTTGACTGGCCATCTCAATACACCTGTAATGCCCCCTCAGAATTGGCAGGAAAGACTTTAAATGAGTATCAGCCCAGCAGGGCGTCATGTGACCCAGGACTCCGTGCGGCTATAGCTGTTCCACTGATCGTGGTTAGTTTCGCAGTCCTGGGGCTTGTTTTTCACATGTTTGATGGAGCCTGGTACCTGCGGATGCTGTGGGTGTGGATGAGGGTGAAACAGAGGGGCTACCAGGGAGCCAAGCGACTGAGCAAAGGTGCTTTCCACTACCACGCCTTCATCTCCTACAGCCAGATTGACTCCAGCTGGGTGGACAGCCAGCTGGTACCCAACCTGGAGTGTACAAACTTCAGCCTCTGCATTCATGAGCGGGATTTCATGCCAGGGGACTGGATCATAGATAACATCATCAACTGTGTGGAAAGCAGCTATAAGACGCTGTTCGTGCTGTCTCGGAACTTTGTCCAGAGCGAGTGGTGCAACTACGAGCTCTTCTTCGCTCATCACCGCGCTCTCAGCATCAAGGAGGATTCCCTCGTCTTCATTCTGCTGGAGCCCATTCCTGCAGACTCTCTCCCCAGGAAGTTTCTGAGGCTCCGCACTCTGCTCCAGCAGCGGACTTACCTGGAGTGGCCAGAGGAGGAAGGGAAACGGCGGATCTTCTGGGCCAGCCTGAAGGCCATGCTGCAAGTAGCTGATGATCGCATTGTCATGAAGCAAGTGGCAAGGGAAATCGCTGAATCATGTCCGCTTCTGAGCGACACCGATTAG

Function

GO: NA

KEGG:

id description
K05398 TLR1, CD281; toll-like receptor 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140980 lncRNA upstream 31388 21056350 ~ 21056973 (+) True G112573
TU140973 lncRNA upstream 56377 21024279 ~ 21031984 (+) True G112566
TU140971 lncRNA upstream 65082 21022933 ~ 21023279 (+) True G112564
TU140937 lncRNA upstream 154143 20930234 ~ 20934218 (+) True G112541
TU140931 lncRNA upstream 164856 20919527 ~ 20923505 (+) True G112535
TU141058 lncRNA downstream 163427 21265578 ~ 21304878 (+) True AMCG00006820
TU141126 lncRNA downstream 515481 21617632 ~ 21620411 (+) True AMCG00006829
TU141218 lncRNA downstream 949527 22051678 ~ 22058486 (+) True G112754
TU141219 lncRNA downstream 957221 22059372 ~ 22059605 (+) True G112755
TU141220 lncRNA downstream 961553 22063704 ~ 22064035 (+) True G112756
AMCG00006811 mRNA upstream 143384 20937547 ~ 20944977 (+) True AMCG00006811
AMCG00006809 mRNA upstream 169951 20908714 ~ 20918410 (+) True AMCG00006809
AMCG00006802 mRNA upstream 321300 20760427 ~ 20767061 (+) True AMCG00006802
AMCG00006803 mRNA upstream 336919 20721803 ~ 20751442 (+) True AMCG00006803
AMCG00006804 mRNA upstream 395748 20675866 ~ 20692613 (+) True AMCG00006804
AMCG00006818 mRNA downstream 74397 21176548 ~ 21200739 (+) True AMCG00006818
AMCG00006820 mRNA downstream 163102 21265253 ~ 21265807 (+) False AMCG00006820
AMCG00006822 mRNA downstream 241491 21343642 ~ 21354607 (+) True AMCG00006822
AMCG00006825 mRNA downstream 264243 21366394 ~ 21385133 (+) True AMCG00006825
AMCG00006823 mRNA downstream 396882 21499033 ~ 21505375 (+) True AMCG00006823
TU140974 other upstream 39323 21048336 ~ 21049038 (+) True G112567
TU140941 other upstream 150191 20937497 ~ 20938170 (+) False AMCG00006811
TU139270 other upstream 8044913 13011184 ~ 13043448 (+) True G111197
TU138516 other upstream 11521010 9566213 ~ 9567351 (+) False AMCG00006565
TU138383 other upstream 12364295 8722450 ~ 8724066 (+) True AMCG00006552
TU141018 other downstream 40714 21142865 ~ 21203201 (+) True G112600
TU141703 other downstream 2929962 24032113 ~ 24036112 (+) False AMCG00006878
TU141783 other downstream 3202628 24304779 ~ 24335916 (+) False AMCG00006884
TU141848 other downstream 3406852 24509003 ~ 24587119 (+) False AMCG00006893
TU141973 other downstream 4515916 25618067 ~ 25618445 (+) True G113369

Expression Profile