RNA id: AMCG00006818


Basic Information

Item Value
RNA id AMCG00006818
length 2613
RNA type mRNA
GC content 0.54
exon number 25
gene id AMCG00006818
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 21176548 ~ 21200739 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aTGTATTTACTATGCATCTTTGTTCAAACAGTGCATTTCAAGATGGCTGAGGGCACGTCTCGTTTCCCATTTCCATACCAACCATACTCCATCCAAGAGCAGTTCATGGAGGCCCTTTACAGTGCCCTGGATGAAGGAAAGGTTGGGATTTTTGAGAGCCCTACGGGAACAGGTAAGTCTCTCAGTCTGATCTGTGGCGCCCTTACCTGGCTGAGGGACTTCGAGGAGAAGAAGAGGCAGGAAGCGGCTCGTCTGCTGGAAGCCGAAGCCTCTAGCACTGAGCAGAACCAAAAGGGTGGCCCCCCAAGTCAGGGGAACTCAGACTCCTCTGCTGAGCCAGACTGGATCACAGACTTTGTGCAGAAGAAGGCTGAGAGAGACCTGGTTAACAAGTTGAAGGACGAGGAGTTGAGGcggaagagaagggaggagcgTTTGGAGTTGATACGAAACAACGCCCAGCTCAAATACACACTGAAACGCAAGGTATCGAACTCACTGGAACTTCTTCATCTGCTTTACAGCTGtcatgatgaagatgaagatttAGAAGAAGACCACGTGACCAAGATATATTACTGCAGCCGCACTCACTCCCAGCTGGCCCAGTTTGTACATGAAGTGCAAAAGAGCCCGTTCGCCAGTGATATTCGACTGGTGTCGCTCGGCTCTCGGCAGAATCTGTGCATCAATGAAGACGTTCACAGGCTGGGTAGTGTTCAGCTCATCAATGACCGCTGTATGGagatgcagaaaaacaaacacgagaagaaagagaaggacGAGGAGCCCAAGAGGAAGCGGGGCGCAGCCAAGCCGGTGTGCCCGTTCTCAGGCCATGATGGGCTGCAGGCACTGCGCGACGAGGCGCTGGTCAAGGTGCGGGACATCGAGCAGCTGGTGACCCTGGGGAAGAAGGCCAAGGCCTGTCCTTACTATGGAGGCCGACTGGCCATCCCTGCTGCCCAGCTGGTGGTGCTGCCCTATCAGACGCTGCTACACGAGTCGACACGCCGTGCGTCTGGGATCAGGCTGAAGGACCAGcTCTGTTGCTCTCACTCTCAACTCACTCAGTACATGGAACGCTACCGAAACCGCCTGAAGGCCAAAAACCTGATGTACATCAAGCAGATCCTGTTTGTGGTGGAGAGCCTGGTCCGAATTCTGGGCGgcAGAATAGGACAAAACCCAAATGCACAGGCAACACAACCAGGAACAGAGTTGCAGACCATCAATAACTTCCTGTTTAATGCACAAATTGATAATATTAACCTCTTCAAGgTGCGGCGTTATTATGAAAAAAGTTTGATCAGCAGGAAGTTGTTTGGCTTTGTGGAAAAGTACCAGGGCTCTGGGGTTAACCCGTCTGACAAGGAGAACCACAAGACGGAGGGACTGAGGCGCTTCCTACAGTCCCTGCAGAAGAGCCAGAGCCAAGGAGAACCCAGTCTGGACCCTAATCAGGCGCCAGAGGACGGGCAGCCCAGGATGGCGTCTCCCATGATGCAAGTGGAAGGTTTCCTCTTTGCGCTTACCAACGCCAACAAAGACGGGAGAGTTGTCATCCAAAAACAAGGTGTGCTGGCCCACAGCAGTGTGAAGTTCCTCTTGCTGAACCCCGCTGTCCATTTTGCTGAGGTCCTGAGAGACTGCAGGGCTGTAATCATCGCGGGAGGCACCATGCAACCTGTGGCCGACTTTAAAGACCAGTTATTGCTGTCTGCTGGGTTGAGCCAGAACCGCATTGCAGAGTTCAGCTGTGGTCATGTGATTCCTCCTGAAAACATCTTACCCCTGATCTTCTGCAGTGGTCCTTCAGGGCAGGCACTGGAGTTCACGTTCCAGAACCGAGAAACGCCACAAATGATGGATGAGACGGGACGGATCCTGTCCAACCTGTGCAATGTGGTCCCAGGCGGGGTGGTGTGCTTCTTCCCCTCCTACGAGTACGAGCGCAGGGTGTACACGCACTGGGAGAGCAGTGGCCTGCTTCAGCGCCTCTCCGCCAAGAAGAAGATTTTCCAGGAACCGAAGAAAGCCAGCCAGGTAGAGCAAGTGCTCAGTGACTACTCCCGGTGCATCCAGAACTGCAAACAATCTGGGGGCCCCTTGTCCGGCGCGCTCCTGTTCTCTGTGGTTGGTGGTAAAATGAGCGAGGGGATCAATTTTTCTGATGATCTCGGCAGGTGTGTGGTTATGGTGGGGATGCCGTATCCCAATATCAAGTCTCCGGAGCTCCAAGAGAAGGTGGCCTATTTGGACAAAAACATGCCTCAGGTGGGAGGCCGCAGTCCCGGGAAGGCCCTGATTGAGAACCTCTGCATGAAGGCTGTGAACCAGTCGATCGgaagGGCTATCCGTCACCGCGGCGACTACGCCTGCATCATTCTCCTGGACTGCCGCTACGCCCGCCCTGCCACCCTGGCCAAGCTGCCCGACTGGATCAAGACCAGCGCCCAGGTGCAGGCCAGCTTTGGACCAGCTTTCGCCAGCATACGGAAGACGGCCACGCTGATTTTGTTCTGCAGCACTTGGCCATGTCTGCAAAATCCTAATGGCGTCTTTATTGACCTACAGTTCTTCATGGAGAAGAAGCGGAAGAATGGAGAGTAA

Function

GO: NA

KEGG:

id description
K11273 DDX11, CHL1, CTF1; chromosome transmission fidelity protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140980 lncRNA upstream 119575 21056350 ~ 21056973 (+) True G112573
TU140973 lncRNA upstream 144564 21024279 ~ 21031984 (+) True G112566
TU140971 lncRNA upstream 153269 21022933 ~ 21023279 (+) True G112564
TU140937 lncRNA upstream 242330 20930234 ~ 20934218 (+) True G112541
TU140931 lncRNA upstream 253043 20919527 ~ 20923505 (+) True G112535
TU141058 lncRNA downstream 64839 21265578 ~ 21304878 (+) True AMCG00006820
TU141126 lncRNA downstream 416893 21617632 ~ 21620411 (+) True AMCG00006829
TU141218 lncRNA downstream 850939 22051678 ~ 22058486 (+) True G112754
TU141219 lncRNA downstream 858633 22059372 ~ 22059605 (+) True G112755
TU141220 lncRNA downstream 862965 22063704 ~ 22064035 (+) True G112756
AMCG00006815 mRNA upstream 74397 21088361 ~ 21102151 (+) True AMCG00006815
AMCG00006811 mRNA upstream 231571 20937547 ~ 20944977 (+) True AMCG00006811
AMCG00006809 mRNA upstream 258138 20908714 ~ 20918410 (+) True AMCG00006809
AMCG00006802 mRNA upstream 409487 20760427 ~ 20767061 (+) True AMCG00006802
AMCG00006803 mRNA upstream 425106 20721803 ~ 20751442 (+) True AMCG00006803
AMCG00006820 mRNA downstream 64514 21265253 ~ 21265807 (+) False AMCG00006820
AMCG00006822 mRNA downstream 142903 21343642 ~ 21354607 (+) True AMCG00006822
AMCG00006825 mRNA downstream 165655 21366394 ~ 21385133 (+) True AMCG00006825
AMCG00006823 mRNA downstream 298294 21499033 ~ 21505375 (+) True AMCG00006823
AMCG00006824 mRNA downstream 324961 21525700 ~ 21554650 (+) True AMCG00006824
TU140974 other upstream 127510 21048336 ~ 21049038 (+) True G112567
TU140941 other upstream 238378 20937497 ~ 20938170 (+) False AMCG00006811
TU139270 other upstream 8133100 13011184 ~ 13043448 (+) True G111197
TU138516 other upstream 11609197 9566213 ~ 9567351 (+) False AMCG00006565
TU138383 other upstream 12452482 8722450 ~ 8724066 (+) True AMCG00006552
TU141703 other downstream 2831374 24032113 ~ 24036112 (+) False AMCG00006878
TU141783 other downstream 3104040 24304779 ~ 24335916 (+) False AMCG00006884
TU141848 other downstream 3308264 24509003 ~ 24587119 (+) False AMCG00006893
TU141973 other downstream 4417328 25618067 ~ 25618445 (+) True G113369
TU142014 other downstream 4614316 25815055 ~ 25832942 (+) True G113400

Expression Profile