RNA id: TU141058


Basic Information

Item Value
RNA id TU141058
length 2706
lncRNA type sense_over
GC content 0.35
exon number 3
gene id AMCG00006820
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 21265253 ~ 21304878 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cgcagATCCAGCCTCTACCGCCTCAGCCGCAGCATCCCCCTCCGCCTCCGCCGCCGCCGCAGCCGCAGCAACTGCAACTGTTGCCCGCCGCCTCCACTTCCCCGCAGCCGGGGCAGTCGAGCCCGGAGTCGGCGGAGGACGAGAAGAAGAGCCCCTGCTGCAAGTCTCTGGTGCCACAGACCCCCTCCACACTTTGCAGGGCTGTGGGACTCGCCAGGAAACCGGAAAATCAGACTGTGTTGCATCAGTTCTGCTGTCCTGCTGCCGACGCCGACCAGAAGGGTGACTCTTCCAGTTGTTCCACAAGaCTCATTATCATGTTGAAAAACAAGCCTTCAGCCTCAAGCCTTCCTGAAGATACTGCATGACTTTAAAGAAAGGAATAATCTTTGAGACTTTATTAAGTTTCCCTAATGTACAGCAGTTAACTAATCCCAAATGATCATATTATGAAACCCATACTTTACACAAGGCACTACAACATTCTTGACAAGCTCCACCCTAGCTCTCTTCTCATGTACTGTTTGCTCTTGTAAATGTCCAACAATTATTAATGTGTGAATAGCCTATCTAtgtccaaatacatttgtttgcgTGCTTTTTTGACCAGTGTTTATGGaattatatgtaaatacatattggGTATTGCTGAGTCAGTATCCAAGTTATGAAGTGTTGAAATTAAGTTGAAAGGACAGGGTGGGGGTCCTGTTCCTGTAGGTTTTATTTAACAGAAGGTAGATTAATTACGTTTTCAGTTGGCATGCTTACAATTGAGAAATGGGGCAGAATAGtcatacaaatataacaaaaaacagtctattttaaaatataataacatgtGAAAATTGGTTGAAAGTAGTTGCAGGATGCagcttttcacaaaataaaacttaaaacaaatgttcagtGTGGAAAAAGCCATGCAAAGCAAGCTGCATTAATTTATCAACACAgaaccattttttgttttctttagcatTTTGTTTCCTGCATGTGTTACTGAAATAAAGTATGTGGCATTGGAAAAGTTGAATTTCTACTCAACTTTCTCAACCATAATTTTAGTGATGTATTTTCCACAGAACAGTGAAATTATTTAGTACAAAAATAGGCTAAAGTAAcctgaattacatttaaaaaaacaatagatatatgtaaaaaataagcTTATGTAAAAATAACGCAGCTTAAAGTATACTCTACTTACCAGCCAAAATAAACGAGGATTCTTAGAGGAAATTCAGATCATGTGATAGGATATAATTccattatatacaaaaaatgctGGACTTAAACAGAAGAGGTTGTTCATCATAGTAGTTACCAGGTGAATAGCACATCGAATGTACATATTCTGCAAATTGGAGGTatgtttggtttaattaaaataaatcccagtCTCCCTCTGTACATTTTATAGTAGATTGTTTTTTctgcaatgaaaatatttttgattaCATTGGGATTCATTGCAATCATGATGCTTTCTCATCAGACTAATGATGGTACAAAAGAAGCAAACTGTTATGAGTACATTTTGCCCAATTCTACCTCTGTATCTTATCACTTGTGGAGACAAATGTGTATTCTTTCCTCCTGCACTGAGTATAAAGTTGCTTGGGACATCTCAACTTTTGAATTTAAAAGAGCACTTTAAGCATTTGAATGttaataatgaatgcagattaatgaaatgtattccaTTTGATTCTTTGGGGGAAACTGTGTATGAACAGTCTGATTTTAGCAGgtgaaaacattattattttctctctctctatctcactgCAGTTAGAAACCTATACCACTAATTAAGACAAGAAGTCTGACATATTAATGTGTGGCAACTTCCCCTGCTATAGTAgtctttgctgttgttttgcatattgtattttgaatagtGTTAGATCTGCATGGTAAGTGCTGAACTATAGGATATCAGTtgacattgaaaataatttatgatacattacaaaataattgtatatgtatataaaaagctGTTGTGCTCTATGCTGATTAAAGTTAGTGAATATGTAGTGAGGTGTGTTGCGTAATCAACATCAGCCTCATTGTTCAGTGCATTACCAATCATCATTGAAGCATTAATTCAGTCAGTATTGTTATAAATTCATCTTATTCAGTTTTGAAAGGTATTCTGttctgttatatttatttatttgtgtatttatgtatgcatttatgtatgtatgtatgtatgtatgtttgtatgtatttatttatttatatgtgtgagtttgtttttgtagaaaaGGAGCATTGAACAGAcctataacaaaactaaacatgtttataaaagtattataaaaaaaaaactattcctaagaataataaaatatgtgtaatgtgtatgtgGAAGTATATTAAATAGTACTATAGAGGAATAAAGGAACTGCATGgaaatgattaatatatttaataaaattattacaaatagTGCTGTTATGTTGGgatacatttactttgcatatataacaattacaatttcaGATAATATATTCATTGTAATGTCCATGTTTAATTTTTAGTATCCACATAACTCCTgaacatgttttatatgtaatacatatgAGCCAATTGTATATTAAAGGAACCTTAAATctatttcatgcatttaaaccatacataaataataaagtggCGTGCCCAAAAGCACTTTAGAATGGTGTGATTAAGGCATTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140980 lncRNA upstream 208605 21056350 ~ 21056973 (+) True G112573
TU140973 lncRNA upstream 233594 21024279 ~ 21031984 (+) True G112566
TU140971 lncRNA upstream 242299 21022933 ~ 21023279 (+) True G112564
TU140937 lncRNA upstream 331360 20930234 ~ 20934218 (+) True G112541
TU140931 lncRNA upstream 342073 20919527 ~ 20923505 (+) True G112535
TU141126 lncRNA downstream 312754 21617632 ~ 21620411 (+) True AMCG00006829
TU141218 lncRNA downstream 746800 22051678 ~ 22058486 (+) True G112754
TU141219 lncRNA downstream 754494 22059372 ~ 22059605 (+) True G112755
TU141220 lncRNA downstream 758826 22063704 ~ 22064035 (+) True G112756
TU141221 lncRNA downstream 760717 22065595 ~ 22065804 (+) True G112757
AMCG00006818 mRNA upstream 64839 21176548 ~ 21200739 (+) True AMCG00006818
AMCG00006815 mRNA upstream 163427 21088361 ~ 21102151 (+) True AMCG00006815
AMCG00006811 mRNA upstream 320601 20937547 ~ 20944977 (+) True AMCG00006811
AMCG00006809 mRNA upstream 347168 20908714 ~ 20918410 (+) True AMCG00006809
AMCG00006802 mRNA upstream 498517 20760427 ~ 20767061 (+) True AMCG00006802
AMCG00006822 mRNA downstream 38764 21343642 ~ 21354607 (+) True AMCG00006822
AMCG00006825 mRNA downstream 61516 21366394 ~ 21385133 (+) True AMCG00006825
AMCG00006823 mRNA downstream 194155 21499033 ~ 21505375 (+) True AMCG00006823
AMCG00006824 mRNA downstream 220822 21525700 ~ 21554650 (+) True AMCG00006824
AMCG00006829 mRNA downstream 312755 21617633 ~ 21622508 (+) False AMCG00006829
TU141018 other upstream 62377 21142865 ~ 21203201 (+) True G112600
TU140974 other upstream 216540 21048336 ~ 21049038 (+) True G112567
TU140941 other upstream 327408 20937497 ~ 20938170 (+) False AMCG00006811
TU139270 other upstream 8222130 13011184 ~ 13043448 (+) True G111197
TU138516 other upstream 11698227 9566213 ~ 9567351 (+) False AMCG00006565
TU141703 other downstream 2727235 24032113 ~ 24036112 (+) False AMCG00006878
TU141783 other downstream 2999901 24304779 ~ 24335916 (+) False AMCG00006884
TU141848 other downstream 3204125 24509003 ~ 24587119 (+) False AMCG00006893
TU141973 other downstream 4313189 25618067 ~ 25618445 (+) True G113369
TU142014 other downstream 4510177 25815055 ~ 25832942 (+) True G113400

Expression Profile