Gene
RNA
| Item | Value |
|---|---|
| RNA id | AMCG00006822 |
| length | 1242 |
| RNA type | mRNA |
| GC content | 0.57 |
| exon number | 2 |
| gene id | AMCG00006822 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CM030134.1 |
| NCBI id | CM030134.1 |
| chromosome length | 29342575 |
| location | 21343642 ~ 21354607 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| species | bowfin (Amia calva) |
| id | name | namespace |
|---|---|---|
| GO:0043087 | regulation of GTPase activity | biological_process |
| GO:0016192 | vesicle-mediated transport | biological_process |
| GO:0030036 | actin cytoskeleton organization | biological_process |
| GO:0005802 | trans-Golgi network | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0030054 | cell junction | cellular_component |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU141058 | lncRNA | upstream | 38764 | 21265578 ~ 21304878 (+) | True | AMCG00006820 |
| TU140980 | lncRNA | upstream | 286669 | 21056350 ~ 21056973 (+) | True | G112573 |
| TU140973 | lncRNA | upstream | 311658 | 21024279 ~ 21031984 (+) | True | G112566 |
| TU140971 | lncRNA | upstream | 320363 | 21022933 ~ 21023279 (+) | True | G112564 |
| TU140937 | lncRNA | upstream | 409424 | 20930234 ~ 20934218 (+) | True | G112541 |
| TU141126 | lncRNA | downstream | 263025 | 21617632 ~ 21620411 (+) | True | AMCG00006829 |
| TU141218 | lncRNA | downstream | 697071 | 22051678 ~ 22058486 (+) | True | G112754 |
| TU141219 | lncRNA | downstream | 704765 | 22059372 ~ 22059605 (+) | True | G112755 |
| TU141220 | lncRNA | downstream | 709097 | 22063704 ~ 22064035 (+) | True | G112756 |
| TU141221 | lncRNA | downstream | 710988 | 22065595 ~ 22065804 (+) | True | G112757 |
| AMCG00006820 | mRNA | upstream | 77835 | 21265253 ~ 21265807 (+) | False | AMCG00006820 |
| AMCG00006818 | mRNA | upstream | 142903 | 21176548 ~ 21200739 (+) | True | AMCG00006818 |
| AMCG00006815 | mRNA | upstream | 241491 | 21088361 ~ 21102151 (+) | True | AMCG00006815 |
| AMCG00006811 | mRNA | upstream | 398665 | 20937547 ~ 20944977 (+) | True | AMCG00006811 |
| AMCG00006809 | mRNA | upstream | 425232 | 20908714 ~ 20918410 (+) | True | AMCG00006809 |
| AMCG00006825 | mRNA | downstream | 11787 | 21366394 ~ 21385133 (+) | True | AMCG00006825 |
| AMCG00006823 | mRNA | downstream | 144426 | 21499033 ~ 21505375 (+) | True | AMCG00006823 |
| AMCG00006824 | mRNA | downstream | 171093 | 21525700 ~ 21554650 (+) | True | AMCG00006824 |
| AMCG00006829 | mRNA | downstream | 263026 | 21617633 ~ 21622508 (+) | False | AMCG00006829 |
| AMCG00006828 | mRNA | downstream | 268070 | 21622677 ~ 21623130 (+) | True | AMCG00006828 |
| TU141018 | other | upstream | 140441 | 21142865 ~ 21203201 (+) | True | G112600 |
| TU140974 | other | upstream | 294604 | 21048336 ~ 21049038 (+) | True | G112567 |
| TU140941 | other | upstream | 405472 | 20937497 ~ 20938170 (+) | False | AMCG00006811 |
| TU139270 | other | upstream | 8300194 | 13011184 ~ 13043448 (+) | True | G111197 |
| TU138516 | other | upstream | 11776291 | 9566213 ~ 9567351 (+) | False | AMCG00006565 |
| TU141703 | other | downstream | 2677506 | 24032113 ~ 24036112 (+) | False | AMCG00006878 |
| TU141783 | other | downstream | 2950172 | 24304779 ~ 24335916 (+) | False | AMCG00006884 |
| TU141848 | other | downstream | 3154396 | 24509003 ~ 24587119 (+) | False | AMCG00006893 |
| TU141973 | other | downstream | 4263460 | 25618067 ~ 25618445 (+) | True | G113369 |
| TU142014 | other | downstream | 4460448 | 25815055 ~ 25832942 (+) | True | G113400 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| zebrafish (Danio rerio) | TCONS_00053840 | False | 5161 | mRNA | 0.45 | 14 | NC_007115.7 | 26496489 ~ 26763555 (+) |
| grasscarp (Ctenopharyngodon idella) | CI01000019_00883109_00944808.mRNA | True | 3402 | mRNA | 0.49 | 14 | CI01000019 | 883070 ~ 944808 (-) |
