RNA id: AMCG00006823


Basic Information

Item Value
RNA id AMCG00006823
length 2566
RNA type mRNA
GC content 0.38
exon number 8
gene id AMCG00006823
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 21499033 ~ 21505375 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCCCATTGGTCAGTCAGCAGCATGACGTATAGGGAAGTAAACAACAATCGGTGGAGAAACAGAAGCGGAAGATGCATTGCTATGGAGTGTATTAATGGCATAAAAAAAACCtacattgcttttattttttctttaaaaatcaatgaaGTGGCAAACAACGGCGTAACACCGACTTGTGCATCACTGAATACGAACCAGAGACCATGTTTGTCACAAGAGCAGCCGAAGAGGATGTCAGCGATGTCGAGGAAATGGACACCTCAGAGACCCAGTGGCACTGGTTTTACCTGGCAGACTGCGGAGTCTGGCACATGTTTGagGTTGGGAGTAACACACCATGCACTGTGACTAGTGACGATATTGAAAAGAACTACAGCAGGAATCAGCAAGGCGTTATGGAGTTCTCTACAGCCAAATACACATACCGCTTAGATTTTTCTGTGATGAAACAGACCAATACCAGCACGGGGAAGCAGAGGCCAATCAAGCGCGCTCTTTTTTCAGTGACTGGTTTCAGGTTCATCTGTGATAACCTTGCCTTGCCAGTTCCTTCACATTGGGAAATGATTAACACTGATGATCCCTACCAGCTCATCCCTTTGCATGGAAATACCTATGAATACAAAGAGGTCCTCCGACTCTTTGAAAGGACCTTGCTTGCACGCATTAAGGCAATTAAGAGAATTCAGAACTTAGACCTATGGGAATTCTTCtgcagGAAAAAAGCCCAGCTAAGAAAGATAAAACGAGTTCCAGATATCGAAGAAAGGATGCTTTTTCATGGCACCAGCCACGATATTGTGCAGGCGATATGTACCCACAACTTTGACTGGAGATTAAACGGTAGCCATGGCAATGTCTATGGAAAAGgAACTTACTTTGCAAGAGATGCCAAGTACTCCAGCAAGTTCTGCCACAACGGTGTAAATCATCACATGACTTTACAAACCCACGGAGTGGCGCCACTCATCTTTCAGAGCGAACCTTCATTCAAATCAATGTTCCTCGCTCGAGTGCTTGTTGGGGATTTCACTCTGGGAAATTCAACTTACTGCAGGCCGCCTTCCAAGGACAGAAGTCTCATGAACTTCTATGACAGCTGTGTGGATGATATTGCAAATCCAAAGATTTTTGTGATCTTTGATTGCAATCAAATCTATCCAGAGTACTTAAttgagtttttttaattgcaatgtGTGGTGCTGTGCAGGGCCACCTGGCGTCACAAATGTGTAAATTGCATTGGATGTTGCCCATGGAGTTCCACTCAGGAATATGTCTGAAGGAAACTAATTCATATGTTGGACAATCACCAAACTGAATGTGACTGAACTAAAAACATGCAAATTGGTTTACAGTAGCCTCTCTGTATTGCATGTAGTAATTACATTGTTACTTTTATAAAGTGCCTTACGGATACAACAAAAATGTAGtatttttcaaatctttatGTGAcaatcttttctgtttttctttagaTTAAATCTTCAGTTTAACACTACAAACAAATGAAGAATCTTAGCACAACTGCCTTGGTAAACCGAATAAAAAAGCAGtgatatttagaaattggtAGAATTAATTTGGGCGGATCTTCTAATTATATGTTAGTGTTTTGTTTAGAGTTATTACCTGGATTATGGTTACTGTTGTTTTGTGCCCAGGGATGGAGCTATATACATGGTGCTAAAGtcagcatttgtttatttgtttacataattaggaaataatcataatttagtGTCCACATTATATTTGGATCATTGTGGAGTAATGTGGgttagatttaaaatatatgttttagtaTGTTGGAGTAAGAGTTAGTTCAGCCTCCTGGTTCAGTACGGTTAGGGTTGTAAAGGTATAGTCTTAGTGTTAAGTGGAAACCAGAAATCAGGCTGTTTACtagattaatttatgttttaagagTTTAATCAAATGCCCTTCTCAAGCATTTAAGAAAAGTTCCCATtgtgctgaaatgaaaaatgattatATCAAGATGTGGAAAATGCTGGAAACAGTGCAGTCAGAGCTAATCAGTCcatatttaagttaaatgtctCATCATCAATAGTGGTAGAAGGCTTTGTAAGTAAGTCCCCTCTGTTCCTTATCTgccacacacaaatacaataattttatttttcatttgttaaacTGTTACACCACAAGGTGGAGACATACCACAATGAAAATCACTGGTCTGTAAACTGAAAGTAATAAAAGAAACAAGAGGAAAGAATTAGGCTTTcaagtaaaaaactaaaacaaaaaaactatatgtgtgattatattattttaaatactgaaacagtgtttaaaatgtattagttcCTTCTGGCAATGATAACCAAACTTGAGTCATGCAGATATCTATGGTAAAGTTTTATagtactttgttttaaaatgcagatccTTTTAATTGCCCTACAAGTCCAGttaaaacagagaaagaaagaaaaaaaaatgactggaAACATTTGAGTAAAAgattatgtaattgttttctttgcaggCCTATTCAGTACTTTTTTTACCAAAACCAGGATCAATTAAATTGAT

Function

GO: NA

KEGG:

id description
K15259 PARP7S; poly [ADP-ribose] polymerase 7/11/12/13

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141058 lncRNA upstream 194155 21265578 ~ 21304878 (+) True AMCG00006820
TU140980 lncRNA upstream 442060 21056350 ~ 21056973 (+) True G112573
TU140973 lncRNA upstream 467049 21024279 ~ 21031984 (+) True G112566
TU140971 lncRNA upstream 475754 21022933 ~ 21023279 (+) True G112564
TU140937 lncRNA upstream 564815 20930234 ~ 20934218 (+) True G112541
TU141126 lncRNA downstream 112257 21617632 ~ 21620411 (+) True AMCG00006829
TU141218 lncRNA downstream 546303 22051678 ~ 22058486 (+) True G112754
TU141219 lncRNA downstream 553997 22059372 ~ 22059605 (+) True G112755
TU141220 lncRNA downstream 558329 22063704 ~ 22064035 (+) True G112756
TU141221 lncRNA downstream 560220 22065595 ~ 22065804 (+) True G112757
AMCG00006825 mRNA upstream 113900 21366394 ~ 21385133 (+) True AMCG00006825
AMCG00006822 mRNA upstream 144426 21343642 ~ 21354607 (+) True AMCG00006822
AMCG00006820 mRNA upstream 233226 21265253 ~ 21265807 (+) False AMCG00006820
AMCG00006818 mRNA upstream 298294 21176548 ~ 21200739 (+) True AMCG00006818
AMCG00006815 mRNA upstream 396882 21088361 ~ 21102151 (+) True AMCG00006815
AMCG00006824 mRNA downstream 20325 21525700 ~ 21554650 (+) True AMCG00006824
AMCG00006829 mRNA downstream 112258 21617633 ~ 21622508 (+) False AMCG00006829
AMCG00006828 mRNA downstream 117302 21622677 ~ 21623130 (+) True AMCG00006828
AMCG00006827 mRNA downstream 164001 21669376 ~ 21682306 (+) True AMCG00006827
AMCG00006833 mRNA downstream 284505 21789880 ~ 21794405 (+) True AMCG00006833
TU141018 other upstream 295832 21142865 ~ 21203201 (+) True G112600
TU140974 other upstream 449995 21048336 ~ 21049038 (+) True G112567
TU140941 other upstream 560863 20937497 ~ 20938170 (+) False AMCG00006811
TU139270 other upstream 8455585 13011184 ~ 13043448 (+) True G111197
TU138516 other upstream 11931682 9566213 ~ 9567351 (+) False AMCG00006565
TU141703 other downstream 2526738 24032113 ~ 24036112 (+) False AMCG00006878
TU141783 other downstream 2799404 24304779 ~ 24335916 (+) False AMCG00006884
TU141848 other downstream 3003628 24509003 ~ 24587119 (+) False AMCG00006893
TU141973 other downstream 4112692 25618067 ~ 25618445 (+) True G113369
TU142014 other downstream 4309680 25815055 ~ 25832942 (+) True G113400

Expression Profile