RNA id: AMCG00006824


Basic Information

Item Value
RNA id AMCG00006824
length 4205
RNA type mRNA
GC content 0.45
exon number 17
gene id AMCG00006824
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 21525700 ~ 21554650 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGGCTTCGTTGACTAATTAAAGAGGCTGTTGCTAAGAGATGACGAGCACCATAGTCTGGCGCTTCTGATGTGCTTACACCGGAACCTGCAGCGCTCAGGGGGGTTCTGCCACCAAACTGTGACCCCTTGAAAGGAAGAACTGAACAAAGTAGCATGGCAGCTTTTTCAAGCACCTGTGCCGCCAAAGTGGCCCACAGCAGCCGCACAAAGGAGGACGCCTCGTCGTCCTTAAGCACAGACGCCCGGGACTGGAGCGGCGGCGACAGCCTGGAGACCGGCCGGCTCACCATGTTGGAGAAGGCGCACGAGTTTTTCCAGACCTGTGACATCGAGGGCAAGGGCTTCATCAATCGAAGAGATATGCAGaggCTCCATGGTGAGTTGCCCCTCAGCGCAGATGAACTAGAGAATGTCTTCGACACGCTGGACGCAGATGGGAATGGTTACCTCACCTTGGAAGAGTTCACAACAGGGTTCAGCGAGTTTCTATTTGGCCGGAGGATCTCTGTGAGTGAGGTGGTGGAGGAGCCAGGCCAGTGCCAGAGCCAGCCGGAGAGCTTCTACCAGAGCCAGTGGGAGGAGCGGCTGGCTGGCAGCGAGGATGACGAGGAGAGGCATTTCTGCATGCTCATCGACAGCCTGGGAGCCAGCAATATCTTTGAAGAgcCCAGCGAAGTCCGTAGCCTCTGGGCCCAGCTGAGGCGAGATGAGCCCCAACTTCTGTCCAATTTTGAGGAGTTCTTGGCCAGAGTCACCTTCCAGATAAAGGAGGCCAACCAGGAGAAGAGCGAGATGGAGAGTGCACTCAAGAGAAAGGCAGCTACACACGATGATGAAATCCAGCGACTGTACGAAGAAATGGAGCAACAGATTAAGAATGAGAAGGAACGAATACTTTTGCAGGATTCAGAGCGCTTTCTCTCCCGCAGCCAGGACCTGGAGCAGCAACTGACGAGCAAGGAGGTGGAGCTGGAGCAGCTATGCCAGAAGCAGAGGAGGCTGGAGAGACAGTGCTTGGACCTGCACAGCGAGCAGCACGAGACCAAGGTGGAGAACGTGAAGTTGAAGCAAACCAACGAGGAGCTGGGGAGGGAGCTGGAGCGCACCTGCCAAGAGCTGGCCCTGGCCCAGGAGCAGCTCAACCTCCTGCAGGAGCAGGCCTCCCGACTGCATGAGGAGAGGGAGATGGAGCTGTATAGGGTTACAGAAGGACTACAAAGAGAGCGAGCGAGCCTTCTGAAACAGCTTGACCTCCTGAGggaaatgaacaaacatttaCGAGATGAGCGAGATATGTGTTATCAACCAAAGAATTCAGTCAAAAACTCTTCCTGGAACCAGAGATCTGGATCAATTGTTGGTAAATACATGGAAAGAAAAACGTCCATTAAAAGCAGTGATGATGAAGACGACCTTCTCTCCTACTCCAAGAGGAGGAACTCGGCCGGTCTGAATGGGTTCTGTCAACTGGGTAAGGAGAGCGAAGGGGAAAGCAAGGGGATGAAGAAGCGGCAACTTCAGCGGATCATTTCCATTGAGGAGGATCACCTGCCCCAGTTCCTCCATGTGGAGTATGAGGCTCAGCTGAACGAGTGGACTGAGGAAGATGACGACGTGGAGGAGGATCTGACCCGGAGAAAGCAGGATCAGAGGTCTTTAGAAGCGGCCAAAGCCCCCATTTCTGAAGTTCCTGCTGTCCCATTGACTTCAGAGGAGACCCTGTCTCAGGAGAGCGATCAGACCTCCAGCCACATAGCTCCTTCCTCACCACGCGGCCAGCCTGAGGAGAGCATGGTCTCCACTCCTGATCGCTTGTTTAAGATTGTCCTCGTGGGAAACTCCAGTGTGGGGAAGACCTCCCTCCTAAGACGCTTTTGTGATGACTGCTTTTACCCCGGCACATCTGCCACTGTAGGGATCGACTACAGTGTTAAAACAGTAACAGTAGAAAACAGCCAGGTGGCGCTGCAGATGTGGGACACAGCTGGACAGGAAAGGTATCGCAGTATTACAAAGCAGTTCTTCAGAAAGGCTGATGGAGTTATTGTGATGTATGACATCACCTCTGAACAGACGTTTACATCTGTACGCCACTGGCTGACGAGTGTCCATGAAGGCGCTGGAGACGATATTCCCATCATGCTGCTTGGGAACAAAACTGACAAGGAGAGTGAAAGAGAAGTCCAGATGAAAGTGGGGGAGAAATTAGCAAAGGATTCCCAGCTGATTTTCTCAGAGTGCAGTGCCTTCTCGGGTCACAATGTCACGGAGTTGATGCTTCATTTGGCAAAAATTTTAAAGGAACaagaagacaaagacaaagagaaaaCCATTCAACTAGTGGACGACTCTTCAAAGAAGAAGTCCTGCTGCTCGCGACAGTAGACGCCCAGGCAGCGTGGAAGAGATCTGCCGTTAACATCCAAAGGTGCATTCATACAGGTGTTTTTTCACTTGTCACAAGTATTTTTCTTGTCTATTGTTGTACGACTTGATACTGAGCAATCTTTGGAAAACACTCCTTATGTGTATCATAGTAGGTTTTCACTTGCTGATTTTAAATCTCTTTCCAGAAGCATTGGTTGGCAATGTTTTTAGAAAcgtctgtaaaatgttttatcttcAAAGAAACATGAAGCTGATGAAATTAGAAGCACAGGTAAATATTCAATGTAAGAGTTGTCTTTCCCAGCTCtaatgtgtattaatttaaaatcaaatttatGCTTagtcaaacacaatattgtataaataatagCACGTTTATGAAaggttgttttaatttatttgactaCTGCTAATAACACCACacaactttatttaaatcatgttaatattaaattgtcttttaaaaactgaGGGCATGACACTTTTGCCTGGccacaattgttttttatatgtgatTAAATGTATCTAGAGTTTGTACTTTCAACCACTTTGCAGCTTTCTTTCAGATGtaaaaaaagctttataatgAGAGACCAGTTCACAGAAGAGTCATGACTAGAAATGTTAATGTATCtgctttgtaaaaacaaaaactcgaTGTCACTAAGAGCCTTACAGaatatgtttgtaaaatatgaattgtaCATCTTCTTGAATTAGTAGTTAATGATTACTAGGAAAAAGAGTACGTAGAAAgtgtctgtatttgtgtttcctgttttatttctaCTATGTAAGTTATACCATGGTTGTACCAAAATGTGGGATTTTCTAGGATTTAACTGTATAACCGTTACATCACTCCATGCATTTGAAATCGAATTGGCCATTTAGTCCTACTCTTGGGTTAACAATGGATTGTCATAGAGTAGGTTTGGTCATTTTGTGTGTACAATCTGAATTGGAAATCCCATATAAATGCATACAGGTTGTGTAAAACTCAAGTTCCAGTTGTTTGTTGTGTGATGTGTTCTTTGGAATCCCATGATTGTCGTACCATTCAAAAAGTAGCCTTTCACAGCAAGTATTTGTATACCAGATGTATTTAGTTGACTTAGTCATTCACTTCAGCATGGCATAAATCAATGCGATTTGGTTCTGTCTGTTTTTGGTCTTTGACTTTCCCATGTTAGACTGATTGCACTTTCCAAACATCATCGTTTTTGTAGCTAGACCTCTTTTTATGAAGTAAAGAGGGAGTTTATTTTAGGCACCACACTGAAAAGTAGGCATCCTGCAACGTGTTGAGCATCCATGTGATTCAGAGTTTGTCAAAGAGAAACCAGTGTTGGGGTGTGAATAGAAAAACAAGTCTCCGTGTTAGGGTTTACTTGCAGAGAGGACGAATGTATTCCCATTTTCACTCAAAAACCTCTCCCTGCTCACAGGTTGGCAATGAAAATCAAAAGACAATCTTTTCCCCATTCCTCACTCTTTGAATGTCtgtagcatttttttatttatttgtatgtttgtttgttcgtcGGTATGTCTGATTGGAAAATGtcataatgtaaaaaatgtacttCCTTGATGGACCTGAAAGACGAGCCAGTGAAAGTCTGGTCTGTGGCCGTGATGTTATGTGATCGCACAAGAAGGACACGCGCGGTTTTCAGAGCAGGTTGTCCCCCGCTCAGCACAGCACTCCTGTAGGAGACACTGCTGACAATCATGTCAATCCTGTTTGTAAGTCAAAATGATGATTACAATGTACTGCACTATAAACATACAAGCACATTGTTCTATAATTGAAA

Function

GO: NA

KEGG:

id description
K17199 RASEF, RAB45; Ras and EF-hand domain-containing protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141058 lncRNA upstream 220822 21265578 ~ 21304878 (+) True AMCG00006820
TU140980 lncRNA upstream 468727 21056350 ~ 21056973 (+) True G112573
TU140973 lncRNA upstream 493716 21024279 ~ 21031984 (+) True G112566
TU140971 lncRNA upstream 502421 21022933 ~ 21023279 (+) True G112564
TU140937 lncRNA upstream 591482 20930234 ~ 20934218 (+) True G112541
TU141126 lncRNA downstream 62982 21617632 ~ 21620411 (+) True AMCG00006829
TU141218 lncRNA downstream 497028 22051678 ~ 22058486 (+) True G112754
TU141219 lncRNA downstream 504722 22059372 ~ 22059605 (+) True G112755
TU141220 lncRNA downstream 509054 22063704 ~ 22064035 (+) True G112756
TU141221 lncRNA downstream 510945 22065595 ~ 22065804 (+) True G112757
AMCG00006823 mRNA upstream 20325 21499033 ~ 21505375 (+) True AMCG00006823
AMCG00006825 mRNA upstream 140567 21366394 ~ 21385133 (+) True AMCG00006825
AMCG00006822 mRNA upstream 171093 21343642 ~ 21354607 (+) True AMCG00006822
AMCG00006820 mRNA upstream 259893 21265253 ~ 21265807 (+) False AMCG00006820
AMCG00006818 mRNA upstream 324961 21176548 ~ 21200739 (+) True AMCG00006818
AMCG00006829 mRNA downstream 62983 21617633 ~ 21622508 (+) False AMCG00006829
AMCG00006828 mRNA downstream 68027 21622677 ~ 21623130 (+) True AMCG00006828
AMCG00006827 mRNA downstream 114726 21669376 ~ 21682306 (+) True AMCG00006827
AMCG00006833 mRNA downstream 235230 21789880 ~ 21794405 (+) True AMCG00006833
AMCG00006830 mRNA downstream 281225 21835875 ~ 21853017 (+) True AMCG00006830
TU141018 other upstream 322499 21142865 ~ 21203201 (+) True G112600
TU140974 other upstream 476662 21048336 ~ 21049038 (+) True G112567
TU140941 other upstream 587530 20937497 ~ 20938170 (+) False AMCG00006811
TU139270 other upstream 8482252 13011184 ~ 13043448 (+) True G111197
TU138516 other upstream 11958349 9566213 ~ 9567351 (+) False AMCG00006565
TU141703 other downstream 2477463 24032113 ~ 24036112 (+) False AMCG00006878
TU141783 other downstream 2750129 24304779 ~ 24335916 (+) False AMCG00006884
TU141848 other downstream 2954353 24509003 ~ 24587119 (+) False AMCG00006893
TU141973 other downstream 4063417 25618067 ~ 25618445 (+) True G113369
TU142014 other downstream 4260405 25815055 ~ 25832942 (+) True G113400

Expression Profile