RNA id: AMCG00006828



Basic Information


Item Value
RNA id AMCG00006828
length 219
RNA type mRNA
GC content 0.58
exon number 2
gene id AMCG00006828
representative True

Chromosome Information


Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 21622677 ~ 21623130 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGTTGCAGGTGGGAGGAGCGGCAGTAATGGCGGTGGGCATCTGGACGCTGATTGACAAGAGTGACTACCTGAGCCTACTGGCTTCCAGCACATTCGCGGTCTCCGCCTACATCCTCATCTTCGCTGGCGGCCTGGTGATGATTACTGGCTTCCTGGGCTGCTGTGCTGTCATCAGAGAGCAGAGGAGCTGCCTCTCCATGAGGAACAGCCTCCTGTAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU141126 lncRNA upstream 2266 21617632 ~ 21620411 (+) True AMCG00006829
TU141058 lncRNA upstream 317799 21265578 ~ 21304878 (+) True AMCG00006820
TU140980 lncRNA upstream 565704 21056350 ~ 21056973 (+) True G112573
TU140973 lncRNA upstream 590693 21024279 ~ 21031984 (+) True G112566
TU140971 lncRNA upstream 599398 21022933 ~ 21023279 (+) True G112564
TU141218 lncRNA downstream 428548 22051678 ~ 22058486 (+) True G112754
TU141219 lncRNA downstream 436242 22059372 ~ 22059605 (+) True G112755
TU141220 lncRNA downstream 440574 22063704 ~ 22064035 (+) True G112756
TU141221 lncRNA downstream 442465 22065595 ~ 22065804 (+) True G112757
TU141222 lncRNA downstream 445091 22068221 ~ 22068423 (+) True G112758
AMCG00006829 mRNA upstream 169 21617633 ~ 21622508 (+) False AMCG00006829
AMCG00006824 mRNA upstream 68027 21525700 ~ 21554650 (+) True AMCG00006824
AMCG00006823 mRNA upstream 117302 21499033 ~ 21505375 (+) True AMCG00006823
AMCG00006825 mRNA upstream 237544 21366394 ~ 21385133 (+) True AMCG00006825
AMCG00006822 mRNA upstream 268070 21343642 ~ 21354607 (+) True AMCG00006822
AMCG00006827 mRNA downstream 46246 21669376 ~ 21682306 (+) True AMCG00006827
AMCG00006833 mRNA downstream 166750 21789880 ~ 21794405 (+) True AMCG00006833
AMCG00006830 mRNA downstream 212745 21835875 ~ 21853017 (+) True AMCG00006830
AMCG00006831 mRNA downstream 232771 21855901 ~ 21868236 (+) True AMCG00006831
AMCG00006836 mRNA downstream 314245 21937375 ~ 21994328 (+) True AMCG00006836
TU141018 other upstream 419476 21142865 ~ 21203201 (+) True G112600
TU140974 other upstream 573639 21048336 ~ 21049038 (+) True G112567
TU140941 other upstream 684507 20937497 ~ 20938170 (+) False AMCG00006811
TU139270 other upstream 8579229 13011184 ~ 13043448 (+) True G111197
TU138516 other upstream 12055326 9566213 ~ 9567351 (+) False AMCG00006565
TU141703 other downstream 2408983 24032113 ~ 24036112 (+) False AMCG00006878
TU141783 other downstream 2681649 24304779 ~ 24335916 (+) False AMCG00006884
TU141848 other downstream 2885873 24509003 ~ 24587119 (+) False AMCG00006893
TU141973 other downstream 3994937 25618067 ~ 25618445 (+) True G113369
TU142014 other downstream 4191925 25815055 ~ 25832942 (+) True G113400

Expression Profile