RNA id: AMCG00006830


Basic Information

Item Value
RNA id AMCG00006830
length 5723
RNA type mRNA
GC content 0.40
exon number 6
gene id AMCG00006830
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 21835875 ~ 21853017 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTGTCTGTTCCTCTCTTGCAGTTGTGCGGCTGTGGTCTGCTGGGAGTGGGCATATGGCTGTCGGTGTCCCAGGGGAGTTTCGCCACCTTCTCCCCCTCCTTCCCGTCCCTTTCTGCGGCTAACCTGGTCATCGCCATCGGCTCCATCATCATGGTGACCGGATTCCTGGGGTGCCTGggggccatcaaggaaaacaagTGCCTCCTATTGAGTtttttcattgtcTTGCTGATTATTCTCCTGGCAGAGTTGATACTACTCATTCTGTTCTTTGTTTATATGGATAAGGTAAGCGAGAACGCGAAGAAGGACTTGAAAGACGGACTTGCGCTGTACAACACAGACAACAATGTCGGTCTGAAAAACGCCTGGAACATCATTCAGGCCGAGTGGAAGTGCTGTGGAGTGATGGGGTACACTGACTGGTACGAAGCCCTGAAAGAGCCCGTGGTGCCGGACCGCTGCTGCCAAGAGCACTACCAAGACTGCGGGCGAAACGCCACCAACATGTTCTGGAAGCAGGGTTGCTATGGGAAGGTGGAAGAATGGTTGGATGATAACAAACACCTCTTGGGCACCATTGGGATGTGCATCTTAGTAATACAGatcCTTGGCATGGCCTTCTCCATGACTCTGTTCCAGCAGATCCACAGAACTGGTAAAAAGTACGATGCCTAGCACCGCCACCAGCAGAGGTATCCTGGCTCACCGTCAGTCTCCAGAGGACAACCCAGAATAGCCCCGTTCTTTCCCCGCAGCACTGGCCAGGCACCAAAAGGCACCCCCACATTTACACAGACTACAGATCTACTCCATcagaattacaattaaaaaaaattgcatataCAGTTTATTTGCCAAAGAGTTGAACTAAAATCAGATCGGAAAAGAGAAGAAGCATCGACTATTGACAATGAACGCTATGTGGCTATCTttcctccttttgtttttgttgtttttttcttctaactaacagtttttaaagaacgcaagaaaggaaaaaaaaaaagaatgcgtTGCTTTACTAATACACTTCTGATCTGCACATGTAAAGCAAAGGGAGGCTCTGAAACACAACAGCTGTGTCGAACAAGTCTCTGGACGTTGGAAGAGCCCTGTTATTTCCAATCTTTGGTAAACAACCGAAGGCTAAAATTTTGCATGCTACAGATTTCTTTTCTACTCGATGGataactttgtattttaaagttaaaataagatatttttttGGATACAATCCTAAgaactttttttagttttaatgtacttttcttTCATGCTCCTTTGCAATatatggatgtttttgttttattttattatttgttttgggcGGGGGCGGgatttggttgttttgttcttaggtttgttttgttttttatgattcATAGAGCGGTCTATAGGATTGAAGACATTACTGTAGGTCACAGAGCTAAATCGTCGTGTGGAAAAATAACAGCCTTTTGTTTCAGCCCTGAATGTGCTCTGTTAAAGCGGGATATTCCGACGCCTGGTTTGTCTTGATAAAACACTTCACAGGTCAATTAAGTGTCCACAACAAAGAATTGTTACTTGTCGTTAATAATGACTTTCCTACTCCAGCTTTCACACGTGTAATATACACACTCTTCATAATAACTCTATCATCATAATTGCTGTCACCTCACCAGCCCTgagttaaaatatattatcctTATTcctataattaaaatgctcacACTAAGCTTGCATTGAAATCacaaatatgaagaaaatgATCATCTTGTGTACTGTATCGATCGGGATACAGTACAGTGCTTGCTGTGGTTGGTTTCAGAGTCGTAGACGACAGATGGGAAGTAGTGACTCAACAAATACCTTTTTGAACGGGAAACCTGGTTGCCTTCCAAGCAGAATTAACAAAACCTTCTAGAAGccatacaaaaatatgttttcatttgagtGGGGGAACGCAGAGTTGAAGCATAAGTCTGGCAAGATTGATCATTGGTGTTGTACAGCCTGCAGtgtttcttccctttttttttgcacacttcagcaatctgtgttttaatttcaggtCCAGGTTGTTCTTTCCGcatcacacacagaaaagcCGCAGAGCTTTTATTACAGTGCACATTTCCACAGACATTCCTGCTAGATGACTTGAAGATATACCTCTAGTTTTAATGCTGCttaaatttgaagaaaaaaaatcttattcaGTCACAAAGGGTGGGAAAGGGAGGTTGTTCAGTTAGGGAGTTGCATCACACTCAAGTACAGAAGCTGTTGGGAAAATTGGCTAGTTGTTTACTTCGAAAACGGGGAAATTGGGACCAGAAGTGAATTGAGTTCTGAATATCATCCTCCGAatgcagaaacattttgaaataattgtttGGGTGGCGGTGGAGTGCTGGGTTGGGCGGGCAGGGGGTACTGTGGATGATGAATTGAGGAACTCTGCCACTGAGCATGTTTGCTGCTATGTGGGAAGTCTGTAGCTAAGAAAGGCAATACGACAtgatggaaaaaggaaaaatgatgTCCATCGTTCACGCTGTTTTgacacactgcagtgttttacTCCATTCTTGTCTGGTCAATCTTGCTGGAAGATGTGTAAcggattgaaaaaaaaaaaaaagaaaacatgcatgatCTTCTTTTGGGTGAAGTTTGTATGACAATACTTAGCGGCAAGGGGAGCCGACGCTGTGACACCATCACGCCTTTGCAGGGGGCCGACATCTGTGTTTTGTCACCTTAGCCTTTGCGAGCGGATTGCGTCCCGTCTCGAGAACGCACCGGTCGTTTCACGTCTGAATAACGATGAAGACAGTTTCGGAAAGTGCTGAGCTGTTGCCAAAATCCaggttttatttagaaatggTGCTTTTCTCAGCTGCCTCTGATGCCCCCAGGAGACGTAACAGTTGCGgcagacttttgttttttcacgCCCTGGCAGGTGCCATTTTCCAAGTAATTAAACATCCCCCCACTCAATGGTGAAGCATAAGACTgatttaatgtttcaatttgGACTTGCCGTGTGTCTGGAAATGAAGTCTACCATTTAATTTCAGCCCCTCAACCAAAGGGGCAGCACTTGGTTTTCCCCGCAAAATTATATGCTGTCCCTCACTTGAACACAACTGTTATATATGAAGTGGTGTGTGTAAGTTCGCTACAGCTTTGCCACCATGCTGGGCTGAAAGAGCAGGGCGGTCTCTCGCTGATTTATATGAAGCATTTGAACTGAAGAGAGAGCAGTTACATtgatatatttctatatatggCCTGATCTGAGGTTTTGAAGATTGCAAGGTGCATTTTGTTAACAATCTAAAATGCTTCAATTACTGTATTCAAGGTTTGAAATTACTATGCCTGGAGTGACTAATATACGTTCATCTTGTCAGTCCCAAAATGGTCAAAAGCAGCCTTAACTGTGTAGAAAATCTTAACATACAGGTCCTAAATACTTCAGCTTCCTTTGTCAAACCTCGTATACTGTATTTCAGCGGATAAAATACATAGAGATTGATTTTTAAGCTCTATTAGGCTGTGATTTAGAATCATGTTCTTCAGAAGAACGTGTCTTTGACGgagtgcattttatttacagtgttgtTCATGTGTGCAGTCTGACAGGTATTTGTCACCGGATCCCATCCTTTCATGTTTTTGCTACAGCAATACTCCATGCTTGATTGAACCAAAATTGAATTGTGTACAAAGTGTATGTAAACGCTCAAAAGTATCTGTCAGTTCAACACAGCTCTCCGGTTTGTTTGATTGCCtaggaagacagagagagtgtcACAATTTATATTAGTTCCTTGGAAATAATTAGGAGAGGTGACATGAATCAGAAGTACCTCACTATGGAAACCTCTGAGTTCAAGCTGACAACCTTTCTGtcttaaacacatttgaaatgacaGGCATTTGGGGAAACCTATGAGCTGAAGTGTGCACAGGGCAGATCCAATTACAATATACTACTTTTGCTAGTGGCTGTAatccaagaaagaaaaatacatttaaaaggtgaactgtgctttgtttttgttgttttccttacattttgaactattgtgtaaattgtaagcTGATCAGTGTTAAACTGTACAGGATTTCTGTACAAAAACCAACCAGTGCTGAGTCACATATGCTTCCCTACATGACcaacacatttttgtgtattttcagtgtaattTTTAAAAGAAGCTGAGCTGGGTTAACCAGCATTATGTGATGCAAATCCTATGGAATAATCTTGTCTTTTTAATGACTGTGGTAATTTGAGAAAATTGACCTTGAACTCTGAAATCAGATCAGTCTTTTCTTACTAGGTCTTCAACATCATTGGCATCTTGCAGTATTTGTGATCTGTAACCAGAAAGCAGGAGAGCTTTTGTTTTCTAGTCCTAGTCATGGTAGGAATTGGATTTTCACCAATATGTTGGCAACCAGCAGACTTTTAACAGTCCATGTGGGttacctttttatatatacctGTGCAGGATGGACTGATCTCAGGCAAGTTATATGTAACCGCCAAAGACAATAaaggaatgaaaacattttttttttcttttgtatttttttattccagttgTAGTATaactattcaaatgtttaaaggagggacatttttttatatatattttaaatctgcactAGATGcagtttttatgcatttaacaaaagacacaaatgatGTTCTTAAAATTTCTCACTTTATTACGTAAATactgccactgaaaaacagcaaaaatacaataatgctCTAGATCCTGTATGGGGCAGGGGATGAGggaggagaaaaacaagaatgcCTCCCacctttatttttaacaagGTGTTGCAAGCCTTTAGCAATACAACAAAGTCAAGCTCTTGGTCCTGTTACGATGGGCGTTGCCATGAATACTCTGatactgtattatttcacaAGTCTTGTCCCGTTTGTTGTTTGTAAATGAAATGCACTCTGAACATCTCTGAGAGTTGGTATAAtactttattctttttttgtcaAATGAAAAGCTTGTCGTTAAAAACCCATTCATTGCCTTTCAAGTAATGTTGTGAAGAAATGAATGCTGtcgattattttgttttcattttcctgttgttaatgttgttgACTTCcttttcaataatatatttttaattgtatttaatcatgCATAACCAGCAACAACATGTGGGCTTGTGACTGAATACTGGCGAGACTCTTTGAGCCCCCGGCTTTGGCTGTCTCCGCCAAGGGGTGCAACGAAAAAAGAGCGGTATCTTCTTCAAAAGCCCCAGCCCTCATGTGAACGTTAttgtcattgtgttttcatCAGGAGTGCAGAAAACAAGAGgactgcttgtttttgttttttttcttatggtgtttaaaggaatacaaaaattaataaatgaatataaagaagggggaaaacataactttctaaataaaataggAAAGAAGCATTGTGTTGTAGTATTTTTACCATTGGAAGTGCGCGCAGGAATATTTTTGTACCGAGCTTGTTACTCATTGTTTAGGTGGATATGGAAACTTCTTGTGTGTGTTAGTTAATAGACTTTAATGTGCCATTCCATCCAAGTTATGTTTCACATCACGGTTCCTTCTATGCAAAAACACCTACTTTAGCCTTTGTacagattattttgtattagtaataCGTACTGAAATAAAGTGAATAGAACCAACCAAA

Function

GO: NA

KEGG:

id description
K17350 TSPAN9; tetraspanin-9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141126 lncRNA upstream 215464 21617632 ~ 21620411 (+) True AMCG00006829
TU141058 lncRNA upstream 530997 21265578 ~ 21304878 (+) True AMCG00006820
TU140980 lncRNA upstream 778902 21056350 ~ 21056973 (+) True G112573
TU140973 lncRNA upstream 803891 21024279 ~ 21031984 (+) True G112566
TU140971 lncRNA upstream 812596 21022933 ~ 21023279 (+) True G112564
TU141218 lncRNA downstream 198661 22051678 ~ 22058486 (+) True G112754
TU141219 lncRNA downstream 206355 22059372 ~ 22059605 (+) True G112755
TU141220 lncRNA downstream 210687 22063704 ~ 22064035 (+) True G112756
TU141221 lncRNA downstream 212578 22065595 ~ 22065804 (+) True G112757
TU141222 lncRNA downstream 215204 22068221 ~ 22068423 (+) True G112758
AMCG00006833 mRNA upstream 41470 21789880 ~ 21794405 (+) True AMCG00006833
AMCG00006827 mRNA upstream 153569 21669376 ~ 21682306 (+) True AMCG00006827
AMCG00006828 mRNA upstream 212745 21622677 ~ 21623130 (+) True AMCG00006828
AMCG00006829 mRNA upstream 213367 21617633 ~ 21622508 (+) False AMCG00006829
AMCG00006824 mRNA upstream 281225 21525700 ~ 21554650 (+) True AMCG00006824
AMCG00006831 mRNA downstream 2884 21855901 ~ 21868236 (+) True AMCG00006831
AMCG00006836 mRNA downstream 84358 21937375 ~ 21994328 (+) True AMCG00006836
AMCG00006834 mRNA downstream 143208 21996225 ~ 21999726 (+) True AMCG00006834
AMCG00006835 mRNA downstream 151335 22004352 ~ 22013831 (+) True AMCG00006835
AMCG00006843 mRNA downstream 502563 22355580 ~ 22399845 (+) True AMCG00006843
TU141018 other upstream 632674 21142865 ~ 21203201 (+) True G112600
TU140974 other upstream 786837 21048336 ~ 21049038 (+) True G112567
TU140941 other upstream 897705 20937497 ~ 20938170 (+) False AMCG00006811
TU139270 other upstream 8792427 13011184 ~ 13043448 (+) True G111197
TU138516 other upstream 12268524 9566213 ~ 9567351 (+) False AMCG00006565
TU141703 other downstream 2179096 24032113 ~ 24036112 (+) False AMCG00006878
TU141783 other downstream 2451762 24304779 ~ 24335916 (+) False AMCG00006884
TU141848 other downstream 2655986 24509003 ~ 24587119 (+) False AMCG00006893
TU141973 other downstream 3765050 25618067 ~ 25618445 (+) True G113369
TU142014 other downstream 3962038 25815055 ~ 25832942 (+) True G113400

Expression Profile