RNA id: AMCG00006831


Basic Information

Item Value
RNA id AMCG00006831
length 2712
RNA type mRNA
GC content 0.41
exon number 9
gene id AMCG00006831
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 21855901 ~ 21868236 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCTCCCTTTTTAGGCACTGGCTGAAAGAGTTTACTGAATAATTTGCGACACATTGAACCGttaactttttcttttgctgctttctcccttttttcttttgtgcatGATCTACAGCAATGGACAGGAAACTTGGTCTAAACAGGGCTGAAACTttttcctttataaacccctggATCAGGtatttcctcttcttcttcagctTCTTATTCTGGGTGTTTTCTTTACTAATTGTTGCAATTGGGGTGTATGCTAAAGTGCAGAAGGCAACAGACCCCGTTCGAGACACGTTCCTCATTGACCCGGCTGTCATTCTGATCGTCGTGGGAGTCGTTATGTTTTTCATCACTTTCTGCGGCTGTATTGGAGCTTTGCGGGAAAACATTAGACTCCTTAAAACGTTCTCTCTAAGTTTGACGCTGGTGTTTTTGACTCAGCTGGCGATTGCAGTCCTGGGGTTCTTCTATTCTGATCAGGCCCGGGATGCTCTTGGGAAATTTGTGAAGAAGGCCATAAAGCATTACAGAGAAGACCTTGACCTACAGAACCTGATTGACTATATACAGAAAGAGTTCAAGTGCTGTGGCTGGAACAACTACACAGACTGGTCACGCAACCTCTACTTCAACTGCAGCGAGGAGAACCCCAGTAGAGAGAGGTGTGGGGTTCCATATTCCTGCTGTACCCCCGTGCCGGGGGAGGTGGTCATTAACACGATGTGCGGCTTCGGAGTACAAAGCCAGAAGTTCCTAGAGGCGGCCAAGACTATCTACACGGTGGGATGTGCTGACAAAGCAGTCAGCTGGATCGAATCCCACCTCCTCCTGGTGGGAGCACTGGCCCTGGGTCTTGCCCTGCCCCAGGTTGCAGGAATCGTTCTGTCACAGATACTAATATCCCAAATACAGGATGAGATTGGGTCAGTCTTGTGAGGACACCCAGCAATGGCTTCAACAGGTGCCAACTCAACTGGTTAGCCAAGTCAGCATCTTTATAACTGCATGTTGGACAGTTGCTGCCACATTATTCCGTGTTCATACTAAGGCACCCTGTTTGTGTATGATTTGaccattatttttatgaattgttGATATGCTGAGTTTTTCccaatttcagattttttatttccaagatgtttgttaataaaatgcTATAGTCTCTGCAAGTTTCCCCCcaatcccaccccccaccccaatccTATACATTTGATGAATTGTACAATTGTAAGCATGTATATCATCATTACAAATGAGGTTTTACAGAGTAGTTAACAACCCTAAGGTTTGCAAATTTATACTATTCgatttggtttgctttttaGCTCATTATtccatttaaattgatttgtctTGCTGGAGGAATAGCATTTCTTCCAGGCATGTTTATAACCACAAGACCAAGATTTATTGAACACAAATTTAAAGTaaggaaaattaaacaaaatcctgtcagtttattttgctgtattctCACATGGAAATGCATGATTCATCTTATCGTGCTGTAAGTCACAGTATGAtttgatttgtctttctttGCTGAAGGCGAAtaacactgttacacacatttCTCTTGATATtctaatatatttgtatgtggaTAATTCTTGGCTTTCACTGCACCTCTTTTCAGGACTGTTTCTTAGGACCACTGTGATCGATGCCAACCTTCAACAATTGAGTTTCTTTGTAGTCTAATGTTTGGAACTAATATGGATACActtcaattacataaaaaatggaaacaaagcaGCAAATTGGGtagaatttagatttttaatacATAGCTTGAGATTAGCAAATCTACTGCACCTGCATTTAGTAAAATACTTCTATTAGACTTGTACAGATTTTACAATTCAATTGTGTGATTAATAATgagtaaaatcaatcaatataaatgcatattcaaACTGAGCAATATTCTTTAACAATTCAGAATAACTATGATTATGGTGTCCAACAAAGGAATCTTTCAGATCTCACTGCTATGATAAAACTATTCCCTCTGTCCCTGCTACTCATAGTTCCTCTTAACAAGCTGATATCCTCACTAATACAACCTACAGCGGCCATTTTATTTTTCGGTGGTGATGGATAAGTAGGTCTAATCCAAATTATGCAAAGCCAGGGCCCTTTGAACCAGTCTATCTGTCAGAGGGGAGCTGGGTCTGAAAGCATCTCGTTCCACTAAGAGGGACCTGGCAAGTTTCTGGTGTCGTTTGTTCTGTGATTTCATCGCTGCGTGGATCAGTAACTGACAAAAGACATCTCTCTAGGGGGGAAAAGTACTGTTAGTCAAGGTAGCCCTCTACTCGCTGTGTTCTGCTCCGGTCTCTCATGTAATTACTTTTCAAAGCTGCAGGGTGGACGGTTTCTTAAAGTACTGTTTACAGAGCTGCTACAGAAGAGGCAGCATCACACTGATTGTTGCAGTCAGAAGAGGTCAGGAAAGTCAAGGTCTTCTATACAGTTTCTTAAATTCAGGCTGCTGAccagctgtttaaaaaaacaaagccgACCACCATCCAACATCCTATCGTACTTTCTTGACCCGTGATATCCTACGGGTAggaagaaaagcacattttcttaatttcaacAATGTTCAAGCACCCTTTTGTGACGCTCAGTCTGTTAGCACAGTCCAATTCCCCCAACAGATACTTTCTTTGTAAGAAATGTCAtcagcacacacaaaaatgagAACTTAAG

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141126 lncRNA upstream 235490 21617632 ~ 21620411 (+) True AMCG00006829
TU141058 lncRNA upstream 551023 21265578 ~ 21304878 (+) True AMCG00006820
TU140980 lncRNA upstream 798928 21056350 ~ 21056973 (+) True G112573
TU140973 lncRNA upstream 823917 21024279 ~ 21031984 (+) True G112566
TU140971 lncRNA upstream 832622 21022933 ~ 21023279 (+) True G112564
TU141218 lncRNA downstream 183442 22051678 ~ 22058486 (+) True G112754
TU141219 lncRNA downstream 191136 22059372 ~ 22059605 (+) True G112755
TU141220 lncRNA downstream 195468 22063704 ~ 22064035 (+) True G112756
TU141221 lncRNA downstream 197359 22065595 ~ 22065804 (+) True G112757
TU141222 lncRNA downstream 199985 22068221 ~ 22068423 (+) True G112758
AMCG00006830 mRNA upstream 2884 21835875 ~ 21853017 (+) True AMCG00006830
AMCG00006833 mRNA upstream 61496 21789880 ~ 21794405 (+) True AMCG00006833
AMCG00006827 mRNA upstream 173595 21669376 ~ 21682306 (+) True AMCG00006827
AMCG00006828 mRNA upstream 232771 21622677 ~ 21623130 (+) True AMCG00006828
AMCG00006829 mRNA upstream 233393 21617633 ~ 21622508 (+) False AMCG00006829
AMCG00006836 mRNA downstream 69139 21937375 ~ 21994328 (+) True AMCG00006836
AMCG00006834 mRNA downstream 127989 21996225 ~ 21999726 (+) True AMCG00006834
AMCG00006835 mRNA downstream 136116 22004352 ~ 22013831 (+) True AMCG00006835
AMCG00006843 mRNA downstream 487344 22355580 ~ 22399845 (+) True AMCG00006843
AMCG00006842 mRNA downstream 531858 22400094 ~ 22447422 (+) True AMCG00006842
TU141018 other upstream 652700 21142865 ~ 21203201 (+) True G112600
TU140974 other upstream 806863 21048336 ~ 21049038 (+) True G112567
TU140941 other upstream 917731 20937497 ~ 20938170 (+) False AMCG00006811
TU139270 other upstream 8812453 13011184 ~ 13043448 (+) True G111197
TU138516 other upstream 12288550 9566213 ~ 9567351 (+) False AMCG00006565
TU141703 other downstream 2163877 24032113 ~ 24036112 (+) False AMCG00006878
TU141783 other downstream 2436543 24304779 ~ 24335916 (+) False AMCG00006884
TU141848 other downstream 2640767 24509003 ~ 24587119 (+) False AMCG00006893
TU141973 other downstream 3749831 25618067 ~ 25618445 (+) True G113369
TU142014 other downstream 3946819 25815055 ~ 25832942 (+) True G113400

Expression Profile