RNA id: AMCG00006834



Basic Information


Item Value
RNA id AMCG00006834
length 543
RNA type mRNA
GC content 0.50
exon number 4
gene id AMCG00006834
representative True

Chromosome Information


Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 21996225 ~ 21999726 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GCACCAGAAAGTTTATGTGCAACCGGCATGCATGACTGTGACCCAAATCTGGCCACTTGCATAGATGAGACTTCCAGCGCACAGAATCAATCTGCATATTATTGTGTGTGCAAGACGGGGTACcaaggaaatggaaaaactggGAATTGCTCTGATATCGATGAGTGTAACAGTCAGAACGGATTCTGCTCTCAGGTGTGTGTGAACTCTGCCGGGAGTTACCACTGTGAGTGCGACACTGGGTTTGTCTCCAGTGAGAACACCTGCGCAGATATCAATGAGTGTGAGACTCTGAATGGACACTGCTCTCAGCTCTGTGTCAATGCTGTGGGGAGCTACCGGTGCGAGTGCCACGCTGGGTTTACCCTGAGTGAGGAccacaacacctgcacagACACCAACGAGTGTGCAGTTGAAAACGCTGGCTGCTCCCAACTCTGCAGCAACACAGCAGGAAGCTACACCTGTCTGTGCCATCCAGGCTACTCCTTGAATAATGACAACACAGTCTGTTCAGGTAACTGCAGTTTTAGTATAGCATAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU141126 lncRNA upstream 375814 21617632 ~ 21620411 (+) True AMCG00006829
TU141058 lncRNA upstream 691347 21265578 ~ 21304878 (+) True AMCG00006820
TU140980 lncRNA upstream 939252 21056350 ~ 21056973 (+) True G112573
TU140973 lncRNA upstream 964241 21024279 ~ 21031984 (+) True G112566
TU140971 lncRNA upstream 972946 21022933 ~ 21023279 (+) True G112564
TU141218 lncRNA downstream 51952 22051678 ~ 22058486 (+) True G112754
TU141219 lncRNA downstream 59646 22059372 ~ 22059605 (+) True G112755
TU141220 lncRNA downstream 63978 22063704 ~ 22064035 (+) True G112756
TU141221 lncRNA downstream 65869 22065595 ~ 22065804 (+) True G112757
TU141222 lncRNA downstream 68495 22068221 ~ 22068423 (+) True G112758
AMCG00006836 mRNA upstream 1897 21937375 ~ 21994328 (+) True AMCG00006836
AMCG00006831 mRNA upstream 127989 21855901 ~ 21868236 (+) True AMCG00006831
AMCG00006830 mRNA upstream 143208 21835875 ~ 21853017 (+) True AMCG00006830
AMCG00006833 mRNA upstream 201820 21789880 ~ 21794405 (+) True AMCG00006833
AMCG00006827 mRNA upstream 313919 21669376 ~ 21682306 (+) True AMCG00006827
AMCG00006835 mRNA downstream 4626 22004352 ~ 22013831 (+) True AMCG00006835
AMCG00006843 mRNA downstream 355854 22355580 ~ 22399845 (+) True AMCG00006843
AMCG00006842 mRNA downstream 400368 22400094 ~ 22447422 (+) True AMCG00006842
AMCG00006844 mRNA downstream 653138 22652864 ~ 22672256 (+) True AMCG00006844
AMCG00006849 mRNA downstream 689458 22689184 ~ 22714844 (+) True AMCG00006849
TU141018 other upstream 793024 21142865 ~ 21203201 (+) True G112600
TU140974 other upstream 947187 21048336 ~ 21049038 (+) True G112567
TU140941 other upstream 1058055 20937497 ~ 20938170 (+) False AMCG00006811
TU139270 other upstream 8952777 13011184 ~ 13043448 (+) True G111197
TU138516 other upstream 12428874 9566213 ~ 9567351 (+) False AMCG00006565
TU141703 other downstream 2032387 24032113 ~ 24036112 (+) False AMCG00006878
TU141783 other downstream 2305053 24304779 ~ 24335916 (+) False AMCG00006884
TU141848 other downstream 2509277 24509003 ~ 24587119 (+) False AMCG00006893
TU141973 other downstream 3618341 25618067 ~ 25618445 (+) True G113369
TU142014 other downstream 3815329 25815055 ~ 25832942 (+) True G113400

Expression Profile