RNA id: AMCG00006835


Basic Information

Item Value
RNA id AMCG00006835
length 1647
RNA type mRNA
GC content 0.53
exon number 11
gene id AMCG00006835
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 22004352 ~ 22013831 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGCTCGTTTGAGTGCCAGTGCAATGAGTTCTACACTGGCAATGGCACGTACTGTGAAGAATGTGGGGACCTGTCTGTGAAACTGAACATCACCTCCGCCACGACATTCGCAGCAGATGTGGCTTGGTACCCGGAGATCAATATGCTTGACGCAGATGTCAAGATGCTGTATGTTGTGTATTATAAAGAGCCGTATGACACGGCACAAGTCTCGGTGCAGAGACTGGATTCTGGGGCCACCTATCGCTTCTGCATCCGCACACAGGCCTCTACAAAAATCTGCCCAACGAACATTGCAGGCACTGTGAGAACTGCTTTAGATCCCCAGAAGATAATGAGCCAGGTGACATTGAATGTAACGGCCGGTGGAGTGGCCCTAACGTGGAACACTAAGGAAGGTTTGGGACTGGACATCCTGGGCTATAGACTGGAAGGAAAGTGTGGACAATACATCCTCAACATCTCGGCCCCAGGCAACGCCACAGCCGTCATCCTCACTGGCCTGGGTGTTTCATCAGTGTGTTCAGCTGTTTTAACAGTCAACACTAAGCTTTACGGATCAGTGAAGTCCACCCCCTTTACGTTCTACACAACGGgctCAACTCTTTGTCCCACTAAGCTGTTTAAGAAATACGTCTCCCTGACCGTCGCGGTTGTCTCGTGGGATGCGGCTGAAGGATCGAGCAGCTATGACTCTATGCAATATTACGATGTTCTGTCTCCAGAGAAGATCTACTCTCTCCCTGTTTCCACTGAAACCACAGAGGCGGCCCTGACAGGGCTGCAACCCAGTCATACGTACGGAGTGTACATGCACTGTAATCCTCTCTTCAACCTCACCACTGAAGCCATGCTGATCACAACCCCAGCCTCTTCCAGCTCCCCCAGCAATGTGGCAGTCATGGTGAAGCCGCTGGGGTCAGTGTTGGTGACGTGGCTGGCACCGGTGGAGCAGACAAGCCCAGTCAGAGAATACAGGGTTTCCTATGGCCTGCTGAACAGTTCTGGACCAGCCCAGCTCCTAGCCCTGCAGGCCTCAGCGCTCGACTGCACTTTGACTGcTTTGGAAATATCTACGTCATACTTCATTTTTGTAACTGCTCTTAACTTTCAATACGAAGAAGCATCCAGTCCACTGATGTATTTCAGCACGGGTGAAGCCTCTCCCAGCTCCCCCAGCAATGTGGCAGTCATGGTGAAGCCGCTGGGGTCAGTGTTGGTGACGTGGCTGGCACCGGCGGAGCAGACAAGCCCAGTCAGAGAATACATGGTTTCCTACAGCCTGCTGAACAGTTCTGGACCAGCCCAGCTCCTAGCCCTGCAGGCCTCGGCACTGGGCTGCACCTTgacagTGTCTCTTGCTATGAATGTAATTGCAAAGAGCCCCACCAGTGTCCTTGTGAGCTGGACCAGTCCAGCATCCCTGTCAGCCTCCAGCTATGAAGTCCAGTACAGCAGAGGTCtggacagcagctcctccaCTTTAAACACCAAAGAGCAGTCAGTCCTGCTGGCAGACCTCGTGCCCAACAGCACCTACAGCATCACTGTGACGCCCATCGCCAGCGGCGCCAAGGGCAGTCCCATGTACTTAACAGTCAAAACCCCACCTGGTCAGTACTACAGCTTCCTTAAAATAGAGAGc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141126 lncRNA upstream 383941 21617632 ~ 21620411 (+) True AMCG00006829
TU141058 lncRNA upstream 699474 21265578 ~ 21304878 (+) True AMCG00006820
TU140980 lncRNA upstream 947379 21056350 ~ 21056973 (+) True G112573
TU140973 lncRNA upstream 972368 21024279 ~ 21031984 (+) True G112566
TU140971 lncRNA upstream 981073 21022933 ~ 21023279 (+) True G112564
TU141218 lncRNA downstream 37847 22051678 ~ 22058486 (+) True G112754
TU141219 lncRNA downstream 45541 22059372 ~ 22059605 (+) True G112755
TU141220 lncRNA downstream 49873 22063704 ~ 22064035 (+) True G112756
TU141221 lncRNA downstream 51764 22065595 ~ 22065804 (+) True G112757
TU141222 lncRNA downstream 54390 22068221 ~ 22068423 (+) True G112758
AMCG00006834 mRNA upstream 4626 21996225 ~ 21999726 (+) True AMCG00006834
AMCG00006836 mRNA upstream 10024 21937375 ~ 21994328 (+) True AMCG00006836
AMCG00006831 mRNA upstream 136116 21855901 ~ 21868236 (+) True AMCG00006831
AMCG00006830 mRNA upstream 151335 21835875 ~ 21853017 (+) True AMCG00006830
AMCG00006833 mRNA upstream 209947 21789880 ~ 21794405 (+) True AMCG00006833
AMCG00006843 mRNA downstream 341749 22355580 ~ 22399845 (+) True AMCG00006843
AMCG00006842 mRNA downstream 386263 22400094 ~ 22447422 (+) True AMCG00006842
AMCG00006844 mRNA downstream 639033 22652864 ~ 22672256 (+) True AMCG00006844
AMCG00006849 mRNA downstream 675353 22689184 ~ 22714844 (+) True AMCG00006849
AMCG00006850 mRNA downstream 740857 22754688 ~ 22772629 (+) True AMCG00006850
TU141018 other upstream 801151 21142865 ~ 21203201 (+) True G112600
TU140974 other upstream 955314 21048336 ~ 21049038 (+) True G112567
TU140941 other upstream 1066182 20937497 ~ 20938170 (+) False AMCG00006811
TU139270 other upstream 8960904 13011184 ~ 13043448 (+) True G111197
TU138516 other upstream 12437001 9566213 ~ 9567351 (+) False AMCG00006565
TU141703 other downstream 2018282 24032113 ~ 24036112 (+) False AMCG00006878
TU141783 other downstream 2290948 24304779 ~ 24335916 (+) False AMCG00006884
TU141848 other downstream 2495172 24509003 ~ 24587119 (+) False AMCG00006893
TU141973 other downstream 3604236 25618067 ~ 25618445 (+) True G113369
TU142014 other downstream 3801224 25815055 ~ 25832942 (+) True G113400

Expression Profile