RNA id: AMCG00006837


Basic Information

Item Value
RNA id AMCG00006837
length 3000
RNA type mRNA
GC content 0.50
exon number 29
gene id AMCG00006837
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 22019892 ~ 22049178 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGCGCCACAGTCCAGAGAAAGCACCTAGTGAGCGCCATTTACTTAGAGGACCTCAACCAGGAGCCAAATGAAACTCCAACTGATAACAGAGaaaacaagACATACAGTGTTGAGCAAGCTATAGAAGCCATTGGTTTTGGTCGATTCCATGTTATCCTGTATGTTATCATGGGTAGTTCTATAATTGTGGAAGCCATTGAGATAATGTTGCTGGCTGTTGTGTCTCCTGCCATTCGTTGTGAGTGGCGTCTAAAAGACTGGCAGGTGGCTCTTGTCTCAACGTGCATGGGATACCTGGCAGACAGATATGGACGCTGGAAGGTAGTGTTTGGCTGTTTTGCCTGGTCATTGTATTTCTCCTTTTTGACGTCTTTCTCACCCTCCTATGGCTGGTTTGTCTTCCTGCGCACCATGGTGGGAGGTGGTGTGTCGGGGACTGCTCAGGGATTTGTCTTGCAAGCTGAATTTATACCGGCAAAATACAGAGGCTATTTGACACCATTGTCTCAGatTTTCTGGATGTGCGGCTCGTTTTTCATGGTGTTTTTGGGCATGACAGTCATCCCCACCCTCGGCTGGCGTTGGATGATTCGCCTTTCCATCATCCCCagcatcattttaattattcttttcaaGTTCATTCCCGAGTCGGCCCGGTACAACGTCTCTGCGGGGAACGTCAGAGGCACCATGGAAACCCTACAGAGCATCGCCAGAATGAATCGCTCCAGTCTGCCTGAGGGAAAACTGATGGAGTCAGTGACTGAAAAGAGAGGGAACTTCAAAAGTCTACTTGAACCTTCCTTCAGGAGGACATCCATCATCCTGTGGAATCTGTTTATTGCCTCATTTTCATACTATGGTGCCGTTCTGGGCAGCTCTGAGCTTCTGGAGCGAAACCTGCTGTGCGTGACTGACAGTGCGCCACATACCGGGGTCCTGCATTCGGACGACACGCCCTGCTACTGCAAGCCTTTCGGACAGTCTGATTACCACACCATGCTTATTAGCACCTTGGGAGAGGTAGCATTAATCCCACTGAATATGATACTGCTGAACATTTGTGGGCGAAGGTTTTGTCTGGGGTTCTTGATGATGTCATCAGGGATTTTCTTTCTACTGCTTAATATCTGCACAACTGCGCTTGGCTTCACAGCTTTGTTCTTCATCCTCCGTGCCTTGGTGGCAATGGTTTTTAACACGGTGTACCTGTATACTGCTGAGGTTTACCCCACAACAGTGAGAGCCATAGGGATGGGATTCTGTACCTGCTTCAGCCGCGTCGGGGGCATGGTGGCTCCCTTCATAGCTCAGGTACTGATGAGCAATGACAAGTTGCAGCTTGTGAATTCCATCCAGCTACAGGAATTTGAACCGAATGAAGATGAAGCTCCAAAGAGTCCAACTGTCCAAGATGGTAAAGAAGaggaGAAAACGTACAGCGTGGAACAAGCGGTTGAAACAATCGGCTTTGGGCGCTTCCACATTCTTCTATTTTTAATCATGGGCAGTGCCAATATCGTTGAAGCCATTGAGATCATGTTGCTGGCCGTCGTCTCGCCAGAGGTCCGATGCGAGTGGCATCTGCAGGACTGGCAAGTGGCACTGGTCTCAACGatgGTGTTCTTTGGCTTCATGACTTGTGGTGCCTTGAGTGGTTATGTGGCTGACAGATATGGACGCTGGAAGGTTGTGTTTGGAGCCTTTATCTGGGGCGCTTACTTCTCCCTTCTGACCTCTTTCTCACCATCTTACGGCTGGTTTATCTTCCTGCGTGCCATGGTGGGGTGTGGAGTGGCCGGGACTTCTCAAGGgtttgttttaaaaacagagttCATTCCTGCAAAGTACAGAGGCTACTTACTACCATTGTCACAGATTTTCTGGATGTTGGGTGCCGTGTTCATGGTGTTACTTGGCATGACAGTGATTCCCACCCTGGGCTGGCGCTGGATGATTCGCCTGTCCATTATCCCAAGTTTGATTTTACTCGTTCTCTTTCAGTTCATTCCAGAGTCGGCCCGGTACAATGTCTCTGCAGGGAACGTCAAAGCCGCCGTGCAGACCCTCGAACACATCGCCAGAATGAATCGTGCCTCTCTGCCAGAGGGGAGACTGATGGAGCCAGCAGTGacagagagaggaagttTTTACACCTTAGTGAGTTCCACATTCCGGAGGACCTCGATGCTCTTGTGGTATTCATGGTTTGTCGCTTCCTTTTCGTATTACGGCTCTGTCCTCGGAAGCTCAGAGCTCCTGGAGAAGAATCTGCTTTGCATCACGGACGCCGAGGTGGAACACAGGGTGTTGAACCTGGAGAACGTCCCCTGTTACTGCATTCCCTTTGGCACCGCAGATTACCACACCTTGCTGATCAGCTCCGTGGGAGAAGTGTCCCTTATCCCCGTGAATATGATCCTATTAAACTTCATAGGACGAAAATATACCATGGCCATTTTAATGGTATCTTCTGGGGTTTTCTTCCTGCTTCTCAGTATCTGCTCAACACTGTTTGGCTTTACAGTATTGCTTTTCCTGCTTCGTTCCCTGGTGGCAATGAATTTTAGtgctacatacatttatactgCAGAGGTCTTTCCCACTGCAGTGCGATCCATAGGAATGGGGGTCTGCACCTCCTTCAGTCGTATAGGTGGGATGATCGCACCGTTTGTAGCTCAGGTTTTGATGGCCAAGTCGGTAATAACCGCTTTGGTGCCCTTTGCGGAGATGTCTACTGACGGGGAGCTCACCTCCTACACCGGCCCGGCTGCAGACTCTGTGTGTTCAGACCCGTATGAGGAAACGCTGGGAAGAGTAGAAAGAAAATGGCAGCCAAGTGGGAAAATCAGCTGGGGGCACAGAACTGGAGCTGGGCAGATGAAACAGAAGAgacagagcagcagcaggaacaGGAAAAGCAAAGCCACCAACACAATAGCCACGATCATCCCGGCGGAGCGCATCGCATCCCACGGCTCAATGGCCTGGTAA

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141146 lncRNA downstream 166880 21810365 ~ 21853012 (-) True G112705
TU141004 lncRNA downstream 923584 21095341 ~ 21096308 (-) True G112589
TU140975 lncRNA downstream 988020 21024706 ~ 21031872 (-) True G112568
TU140970 lncRNA downstream 1002152 21017201 ~ 21017740 (-) True G112563
TU140969 lncRNA downstream 1003844 21015373 ~ 21016048 (-) True G112562
TU141258 lncRNA upstream 5444 22054622 ~ 22058136 (-) True G112783
TU141271 lncRNA upstream 98612 22147790 ~ 22148893 (-) False AMCG00006841
TU141291 lncRNA upstream 208371 22257549 ~ 22257974 (-) True G112809
TU141373 lncRNA upstream 620682 22669860 ~ 22670883 (-) True G112878
TU141401 lncRNA upstream 717095 22766273 ~ 22772685 (-) True G112903
AMCG00006832 mRNA downstream 142642 21866887 ~ 21877250 (-) True AMCG00006832
AMCG00006826 mRNA downstream 426171 21559785 ~ 21593721 (-) True AMCG00006826
AMCG00006821 mRNA downstream 584705 21414320 ~ 21435187 (-) True AMCG00006821
AMCG00006819 mRNA downstream 784123 21203051 ~ 21235769 (-) True AMCG00006819
AMCG00006817 mRNA downstream 847043 21163972 ~ 21172849 (-) True AMCG00006817
AMCG00006838 mRNA upstream 9066 22058244 ~ 22128302 (-) True AMCG00006838
AMCG00006841 mRNA upstream 81317 22130495 ~ 22197664 (-) True AMCG00006841
AMCG00006839 mRNA upstream 150788 22199966 ~ 22202511 (-) True AMCG00006839
AMCG00006840 mRNA upstream 158485 22207663 ~ 22230259 (-) True AMCG00006840
AMCG00006845 mRNA upstream 485223 22534401 ~ 22543403 (-) True AMCG00006845
TU140946 other downstream 1070056 20854057 ~ 20949836 (-) False AMCG00006813
TU140776 other downstream 1783686 20235856 ~ 20236206 (-) True G112420
TU140642 other downstream 2383967 19633237 ~ 19635925 (-) False AMCG00006774
TU140430 other downstream 3678682 18339270 ~ 18341210 (-) False AMCG00006754
TU140351 other downstream 4386447 17632891 ~ 17633445 (-) True G112059
TU141596 other upstream 1354997 23404175 ~ 23407207 (-) True G113050
TU142176 other upstream 4450837 26500015 ~ 26500681 (-) True G113530
TU142323 other upstream 5353422 27402600 ~ 27527348 (-) True G113645
TU142485 other upstream 6218084 28267262 ~ 28292598 (-) False G113775
TU142484 other upstream 6242277 28291455 ~ 28292598 (-) True G113775

Expression Profile