RNA id: AMCG00006840


Basic Information

Item Value
RNA id AMCG00006840
length 5326
RNA type mRNA
GC content 0.41
exon number 6
gene id AMCG00006840
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 22207663 ~ 22230259 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGTCTGATGCGTGATCCCATGAGTGGCTTTGTCCACCATCATGGTAGACATGCAGAGCCAGTACAGCCCTCCCTCCCCCCTGGAGGACCCCATCCTGGACAGTCCACTGTGTGGGGACATCATACAGAGCATGGAAGACCTTCAAGACATCTCTCAGTCCATCGAAGAAGAAGCTCTGAGCTCCTTCGATGTCCCGGAGTACCAGTCTTCAGGCAATGGCTCTGGCTCAGAAGGCTCCACTGTTCTAGatgccctgaccccagcctccAGCCCTTCCTCGGGGGTGTTTGGGGTCGTGCCCGGCCAAGATGAGCTCTCCTCTGGCGCCCTCAACCTGGAATGTCGAGTGTGTGGGGACCGTGCCTCGGGGTACCACTACGGAGTCCATGCCTGTGAGGGCTGCAAGGGCTTTTTCAGAAGAACCATCCGCCTGAAACTGGAATACGATAAATGTGAACGCAACTGTAAAATCCAGAAGAAGAACCGCAACAAGTGCCAATACTGCAGATTCCAAAAGTGCCTGTCAGTCGGGATGTCTCATAATGCGATCCGGTTTGGTCGGATGCCACAGTCGGAGAAGATGAAGCTGAAGGCGGAGATCCTGACAGTGGATCGGGAGGTGGAGAACCCCCAGCTGGCAGACCAGAAGACCCTCGCCAAGCAGATCTACGAGGCCTACCTGAAAAACTTCAATATGAATAAGTCGAAAGCACGAGTCATTCTGACAGGCAAAGCCAGCACACCGCCCTTTGTAATTCATGACATGGACACCCTGCAGTTGGCAGAGAAGACCCTAGTGGCCAAGATGGTGGGCAATGGCATCCAGAACAAGGAAGTGGAGGTGCGCATTTTCCACTGTTGTCAATGTACCTCCGTGGAGACTGTGACCGAGCTCACGGAGTTCGCCAAGTCCGTGCCTGGCTTCGCCAACCTGGACCTGAATGATCAGGTCACTCTGCTGAAGTATGGGGTCTACGAGGCCATGTTTGCCATGTTGGCATCCAGCATGAATAAAGATGGCCTGCTGGTGGCCTACGGGAACGGCTTCATTACTCGCGAGTTCCTCAAGAGCCTCCGCAAGCCCTTCAGCGACATGATGGAGCCCAAGTTCGAGTTTGCCATGAAGTTCAACGCACTGGAGCTGGACGACAGCGACCTGGCCCTCTTTGTAGCTGCTATCATCTGTTGTGGAGACCGCCCTGGCCTGGTGAACGTGGGCCACATCGAGAAGATGCAGGAGCGCATTGTGCAGGTCCTCAGCCTGCACCTCCAAGCCAACCACCCCGACGACATCTTCCTTTTTCCCAAACTGCTCCAGAAACTGGCCGACCTCCGGCAGCTGGTCACCGAGCATGCACAGCTCGTTCAGGAGATCAAGAAGACAGAGGACACCTCCCTCCACCCGCTGCTGCAGGAGATCTATAGGGACATGTATTGAACACTCGCCTCCAGCAATATTCTTCCATGTTTAGCAGCAAGAAACAAAGATGAGCCACAAACAGTCGAGTCCCCAGTCTCTAGGGGTACCTGCAACACTAGCCCCTCCATTGACTTGTGTGTTGACTGTTTCTGGGAAAGGTTTCCTGTTCTGACAAGCTACCTGATGTACCTCCgttttaacatacatttatttaaaaaccacacaaaaacacaactccCACATTTTCTGTAGTTTTGAATGCTTCATTGTTCCAGACCTGGAGACTCATTTGGATGTTGCACATTCTGTAGGGTAGAACACCCTGAAACACGATCAGCACATTGCCAAATGATTTGGACTTCCACAAACCTCTCACGACAAATGTAACTGCAAGGAAAAGAGCTTCGTTCCAGTTGAAAATGCCACTTGGGATGCATACCAGCTATCCCAGCAGGTTATTCTAAAGCTATAATGCAAATATGGATGTAAACATTCATTGTTTCAGAAATACATCAAGAGTGTTTTTGTGGTGCTCTGCTTTCATCACCTATTCCTGAAGTAAAATTTAACTTCCTCACTTAAAATAATCAATGGAATCAAACAGGCTATGCATGTCCCAAACGAGATCAAGTTTCAgacatttcagtgcatttcagaCACGTAACAAAAATGTGTGCATATGAACAAATAATTCTGCCGATTTTTGAAGGCAGAATTGCTTGGCACTAAAAGTAATTTGTGCAtgttaattgtggttttatatACAGTTGTGGACTACCTAGAGAGACTTTCCCACACAATGTGACGTATTAAAAAAGGTTGACACAATAGTTTTCTCCACTACATCTTCCTTTGAAAAACGTTGATCTCTAGCTGCCAAAATCTGCCTTCTGCCTTTAAACAGATCcataaaataatcacacataCTGCAGCATGTTGAACCTTTGACTGTTGAGAACTGTTGGAAAAGACAGGTGGAAACTTTTGGCTATCACTGATTATTCActtgatttgcataatttgtatttctaaaataatttgacTGTCAAAAAAAATTGTTCTTTGTTtgtagaaaaaactaaatgttcaTTTATATCCTCTGCAGTGTATTTGTTTCCCACTTTGGCTTGGGCGGTAAGATTCAGAATGTCTCATTGTGAAACGGGGGGGAAATGAATAGTGGTAGCAGTAAACAAACACGTCAAGTTCACATGTTGAATAGGGTACTTCAGGCAGTTCTCACTAGGATTAAGTCACAAATTCAATCCACCTGCCAATTGCTAATTCCAAGCCCAACACTTGATGCAACGTTTCCACAGGGGGGACAAAACAAGTGTCCATTTAGTGACATCTTTGGAAATCCTATTGGCTGAAAGGTTGGAGTTTTCAATTAACAAACACTTTAGTCAAAGATGTTGCAACATAAAGACTTAATCCTGTTATACAAGAGACGACTGATGCAGGTAAAATGTATGCCCTATTAGCCAATTGCCTtggttaaatgtaattatttttcatatttaatcttgcattttaatgttttatttctattgGGATATGAGAATATAATTGGTGACTATTGGGCATACTTGTGATTGTCTGCAAAGGCAGTGCTAAGCATAAGTACATTACTTATTGGATACTGTCAGCCCAGAGATGATTTGTCtactgagaaaaaacaaaaacacttagtGGCTAAAGTCCATGTTTAGTGggggggaatttttttttttttttttttgcaaatatgtatAGTAAGTACTTTATTACCCACCAATAAGCCTGAACTGGGAAaagttatttctttttaatcacCACTAGTGCTCATAGAAAGACGATTTACTGCATTGTACAAGTCTGTGTCCTTAGTATCTGCCTTTTACCCTCTACTGTGTGGGTAAAGAATGCAGGATGAAGTTTCGCTTGTTAACATAATGCTTgcatgcttttctttcttctttgttttagGAGATTCGTTTCTACTAATGAAAATGgatgcatgttgttgtttttttgttcgttttttttttcccacatcaAACTTTTTCTCGCTATTAGAATAGAAAGAATTGCCTTCAGCAATTAGAATCCAAGTGGTATTGGACTATTACCAGTTTTCCCAATTGGACTCAATCGACTGGtgcatattttaatacttattgtCTTTAATTGTCAGCTTCTTTGAATTTTATGGAACAAAGTGGAGCCTATCACCATAATTATCAATCAACAAATAATAGTttcacactgtgacacactagAGCTCAAAGTATACGTTTTCAAATTAAGGAGTCTGGCAATTTGATGCCTGACTCCAAATGCCtttgaaaaatgaaagtgaGTTCTTAATGTGATCTCTGAGAACTAATAATCAAAGCTACATTAGTTACTTTCACAGCCAAGAACACATTTCCAGAGAACACTGGAACACTTATTCTACCACATAAGGTCTATGTTTCATGTAAATCCTCCTCAACATACACCCAGTTACTTGGTAAGTACTTGTCGTGACCTAATTAGTATTTCTGAGTAGGTTTGCATACATTCCCCTTCCCCCCTCGTATAAAACTCCTTCATCTTAGAATGCAAATATGCTGCTGTTTCCTTGCTTTCCTCTCTGGTAggttttttgcttttctttttgtttcaccTGCTGTCATTTGTCGCCCTCTGCTGTATTTGTGTAAATTTAAGTCAATTTCAGAATGCTTCTTCCAAAACAACATGCCCCCTCtgcgtttatatttttctgattgTATGACCCTGATCGTATTTCAGTAGTGTGGTTTGAATTGCAGtatgagattttttttcattctacaaacagacaaacaatgtGGTAAAGAGTAGTGCTATACTTGTGTACAGAAATCTCTGGAAAATGTGGCTGTGCTTTTAAATCAAGGTCTAACGTATTTGCCTTAAAATAGGAAGTGAGCTTGTTTAGATTGTGTACCAGACAGCTTTTTCATAACCACACCAATATGTACTAATGCAGGAGGTCCCCAATTCTGTCCATAGTCTCGGAACTAGAAAGAGGTAGTTCAGTGGGTTTTAATCAGACAATATTGACTTAAATGAGAGAGTGTTCAGGTGGAACAAAACCCGGCAGAGACTGTAGCTCTACAGGGCCGGGAGTAGGGATCTCCATAGTAACAGATAACCTGTGTGACTGTATTGTGGTTGAGGAATGCTTTTTGTAAAACTGCCATTATGTCACCTATCAGCTCTTTGGAATTGTCACTTTGAGGCCCTTGTGGAAGCCAACAGTTAACATGCCATGTTGTTTCATGTGTAAGCAGATGCAAAACAGATTAATCCAGTTACTGCTTGTTGGTGTCATGActtttgtcaaatgtttttgtggTAGGTTCCTCAAAGTTGTGGAACTTAGAGACCGACCTGCTTAGCAATAACTATATTTTTAACAAGATTATTCCCTGTATTGTGTGAATCGTTTGTTCACTAAAGACCGTCTATGGTATTCAACCTCATGGTTGGTTTTAATCAGTACCACTGCACTTGCTATGTATGGCAGTATAGCATGCAACAGCATTTCTGaagctgtatttatataattaataattaagctCCCAGCCTTTTTAGCAGAGTTGTATAAGGTACTActgagaattattattattttttttttattttgtaacgctttaattgtttttagatAGTACTAATACATTTTGGATAAACTTTGGTTATGCACTACatcatatttttatgaatgtgcTGTAATTTAGTCGGATCATATTTTTAtactgaagcaaaaaaaaattcaaaaaaatgaatacataaataaggtttaaatctatatatatatatatatatatatatatatatatatatagagagagagagagagatagagagagatagagatatataatgtttttt

Function

GO: NA

KEGG:

id description
K07294 NR1C1, PPARA; peroxisome proliferator-activated receptor alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141271 lncRNA downstream 58770 22147790 ~ 22148893 (-) False AMCG00006841
TU141258 lncRNA downstream 149527 22054622 ~ 22058136 (-) True G112783
TU141146 lncRNA downstream 354651 21810365 ~ 21853012 (-) True G112705
TU141004 lncRNA downstream 1111355 21095341 ~ 21096308 (-) True G112589
TU140975 lncRNA downstream 1175791 21024706 ~ 21031872 (-) True G112568
TU141291 lncRNA upstream 27290 22257549 ~ 22257974 (-) True G112809
TU141373 lncRNA upstream 439601 22669860 ~ 22670883 (-) True G112878
TU141401 lncRNA upstream 536014 22766273 ~ 22772685 (-) True G112903
TU141480 lncRNA upstream 711200 22941459 ~ 22941670 (-) True G112953
TU141483 lncRNA upstream 722926 22953185 ~ 22955077 (-) False AMCG00006854
AMCG00006839 mRNA downstream 5152 22199966 ~ 22202511 (-) True AMCG00006839
AMCG00006841 mRNA downstream 9999 22130495 ~ 22197664 (-) True AMCG00006841
AMCG00006838 mRNA downstream 79361 22058244 ~ 22128302 (-) True AMCG00006838
AMCG00006837 mRNA downstream 158485 22019892 ~ 22049178 (-) True AMCG00006837
AMCG00006832 mRNA downstream 330413 21866887 ~ 21877250 (-) True AMCG00006832
AMCG00006845 mRNA upstream 304142 22534401 ~ 22543403 (-) True AMCG00006845
AMCG00006848 mRNA upstream 357401 22587660 ~ 22589738 (-) True AMCG00006848
AMCG00006846 mRNA upstream 361840 22592099 ~ 22607383 (-) True AMCG00006846
AMCG00006847 mRNA upstream 396142 22626401 ~ 22651517 (-) True AMCG00006847
AMCG00006855 mRNA upstream 651255 22881514 ~ 22928405 (-) True AMCG00006855
TU140946 other downstream 1257827 20854057 ~ 20949836 (-) False AMCG00006813
TU140776 other downstream 1971457 20235856 ~ 20236206 (-) True G112420
TU140642 other downstream 2571738 19633237 ~ 19635925 (-) False AMCG00006774
TU140430 other downstream 3866453 18339270 ~ 18341210 (-) False AMCG00006754
TU140351 other downstream 4574218 17632891 ~ 17633445 (-) True G112059
TU141596 other upstream 1173916 23404175 ~ 23407207 (-) True G113050
TU142176 other upstream 4269756 26500015 ~ 26500681 (-) True G113530
TU142323 other upstream 5172341 27402600 ~ 27527348 (-) True G113645
TU142485 other upstream 6037003 28267262 ~ 28292598 (-) False G113775
TU142484 other upstream 6061196 28291455 ~ 28292598 (-) True G113775

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00047321 True 1418 mRNA 0.55 7 NC_007136.7 2229301 ~ 2254112 (+)