RNA id: AMCG00006843



Basic Information


Item Value
RNA id AMCG00006843
length 906
RNA type mRNA
GC content 0.49
exon number 8
gene id AMCG00006843
representative True

Chromosome Information


Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 22355580 ~ 22399845 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGGCCCCCTGGACACATTCGAGAAGCTAGTGTGGGATCCAAGAAGTCGCAGCAGAAGGAAGGCAGGAAACGGTGACAGAAGCCCCAGGATCGAGGCCTGCAACACAGCAGCTGGCATTCAGAGCAATGGTAGGCTTTTGCCTGACACTCAGAAACACGTCCAACAGCAAGGAGGCAACGGAAAACGGACAAACATGATGACTCATGAACCCCCTCCCCAACACACCAATCAGTATAGcctgTTTCGCCCACCTCAGGGATTACCAGACAATGAGGTCTGGGAGAAGGTCATATTAATTTATGCAGATGCTTCCCAGACCTTTAAAGACCACCCAGCTATGACCATGGGCACAGCAGGGCCAGAACTGAAGCCAGCAAAGGCCCACCCATTCTACTTTACATCTCATGGTGACTTTCAACAGCCAAAAGATCACACGATCTCTCTGCTGAAGCGACCCTGTGAAGTCATGTTTGGACCCTTTTTGTGCACTGCAACCACCTTTCATTTGAAGCTTTCATCGCTGATAGGGATTGTGACTAAAGCTGACGTCGATTATCCGATTCAAaagaagacaaaacagaaagttaaagcAGCCaaaggaatgaatgaatgggAAACAGAGCGCGGAGTGAGGAGGCACATAGCCCGACCCATCTCCTCAATGCCCTTGATTCAGCAGAGAGGCGTGGAGAGTTTTATATTACCTGCAGAATACCTGGAGCTACATGGCAAGAACTTAAGATGTCGTCAAAGCAGCACGATCGCAGTGGAGATGTCAGGGGGATTCCTAAACACCTCTTCCGTGTCAAAGGGGCTGGTTTTGAAGCGTGGGGGGGAGTTTTACCTGGGGGACATTAGCACAGGCAAGCtatttttgaaaggaaagaGTGACATACATGCTTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU141288 lncRNA upstream 44120 22294688 ~ 22311460 (+) False G112807
TU141289 lncRNA upstream 54651 22294688 ~ 22300929 (+) True G112807
TU141281 lncRNA upstream 97194 22257550 ~ 22258386 (+) True G112802
TU141232 lncRNA upstream 143788 22137485 ~ 22211792 (+) True G112762
TU141222 lncRNA upstream 287157 22068221 ~ 22068423 (+) True G112758
TU141317 lncRNA downstream 55917 22455762 ~ 22455964 (+) True G112832
TU141360 lncRNA downstream 283115 22682960 ~ 22683187 (+) True G112868
TU141460 lncRNA downstream 464140 22863985 ~ 22864508 (+) True G112938
TU141465 lncRNA downstream 477544 22877389 ~ 22881356 (+) True G112940
TU141481 lncRNA downstream 553335 22953180 ~ 22956200 (+) True G112954
AMCG00006835 mRNA upstream 341749 22004352 ~ 22013831 (+) True AMCG00006835
AMCG00006834 mRNA upstream 355854 21996225 ~ 21999726 (+) True AMCG00006834
AMCG00006836 mRNA upstream 361252 21937375 ~ 21994328 (+) True AMCG00006836
AMCG00006831 mRNA upstream 487344 21855901 ~ 21868236 (+) True AMCG00006831
AMCG00006830 mRNA upstream 502563 21835875 ~ 21853017 (+) True AMCG00006830
AMCG00006842 mRNA downstream 249 22400094 ~ 22447422 (+) True AMCG00006842
AMCG00006844 mRNA downstream 253019 22652864 ~ 22672256 (+) True AMCG00006844
AMCG00006849 mRNA downstream 289339 22689184 ~ 22714844 (+) True AMCG00006849
AMCG00006850 mRNA downstream 354843 22754688 ~ 22772629 (+) True AMCG00006850
AMCG00006851 mRNA downstream 374875 22774720 ~ 22805606 (+) True AMCG00006851
TU141018 other upstream 1152379 21142865 ~ 21203201 (+) True G112600
TU140974 other upstream 1306542 21048336 ~ 21049038 (+) True G112567
TU140941 other upstream 1417410 20937497 ~ 20938170 (+) False AMCG00006811
TU139270 other upstream 9312132 13011184 ~ 13043448 (+) True G111197
TU138516 other upstream 12788229 9566213 ~ 9567351 (+) False AMCG00006565
TU141703 other downstream 1632268 24032113 ~ 24036112 (+) False AMCG00006878
TU141783 other downstream 1904934 24304779 ~ 24335916 (+) False AMCG00006884
TU141848 other downstream 2109158 24509003 ~ 24587119 (+) False AMCG00006893
TU141973 other downstream 3218222 25618067 ~ 25618445 (+) True G113369
TU142014 other downstream 3415210 25815055 ~ 25832942 (+) True G113400

Expression Profile