RNA id: AMCG00006844


Basic Information

Item Value
RNA id AMCG00006844
length 1951
RNA type mRNA
GC content 0.42
exon number 10
gene id AMCG00006844
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 22652864 ~ 22672256 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGAGCACAAGTATTGATAAACAATTGCACGTCATAATCAAAGTCACAAGGTATGGAAGCAAACAGGTCATTTCCTCTGTCCCACTTCCTGTGCTGCGTGCCTTCACTGCTCCCGATCTCAAGAAATAGATACCAAGACAGGACTGCCATCCCTTCCAACAGGAGCACACAACAGAGTGCATCTGTCTTGGACCAACATGAATTTGACAGCAGAAAGCCACCACATCCTTTTGAACGATGGAAATAAGATGCCACTTATAGGACTCGGAACCTATGGGGACCCACGGACAACCCCCAAAGGAACCTGTTATGAATCAGTAAAGTTGGCGATTGATGTTGGATACCGACACTTAGATGGAGCCTTGGTGTATTTCAATGAACACGAGGTTGGACAGGCCATACGGGAGAAAATCGCTGAAGGAAGCATCAAAAGGGAAGACATTTTTTACTGTGGCAAGCTTTGGAATACCTTCCACCCCCCCGAGTTGGTCAGACCTGCCCTGGAGAGGACTTTGAAGACTCTTCAACTGGACTACGTTGATCTCTATATAATTGAACTTCCCATTGCATTTAAGCCAGGGGACACATTTTACCCAAAAGATGAGAATGGGAAGCATATTTACCACGAGTCAGACCTTTGCGCTACATGGGAGGCTATGGAAGCATGTAAAGATGCAGGGTTGACGAAGTCCATTGGCTTGTCCAACTTCAATCACAGGCAAATGGAGCTGATCCTGAAAAAGCCAGGCCTCAAACATAAACCTGTTTCAAATCAGGTTGAATGTCACCCATATTTCACTCAGCCCAAGCTTTTAGAGTATTGCCGGCAGAATGACATTGTTATTGTGGGCTACAGCCCTTTGGGAACGGTCAATTTAACTTGCCCACCTCTGTTAGAAGATGCTCTTCTTGTGTCGATTGGAAAGAAGTACAACAAGACAACGGCGCAGGTGTCCTTGCGCTTCAATGTTCAGAGGGGTGTCGTGATCTTTGACTTCTCCCTTACCGATGAAGAAATGAAAGCCATTGAGGAGCTTAACAAAAATATACGCTTTGTGGAGCTGCTGATGTGGAGCGATCATCCAGAATACCCGTTTCATGATGAATTCTAGACATCGTTGGCATCAGAGCGTCAATCGACAGAAATCACACAAACCCGAGTTGAAAAGATTTGAAATGCAGGAGACTAATAAGAGCAAACCTAGATTGTGCatatctgtctgtatgtctgctGTTTCTGagatacatattttgtttgattttaaatgtttaacctACCTTCATGTATTTGTggaccattaaaaaaaaaacattcagcatATAGAAATGGGGTGcttataatacatgtaattgtatatatttgggatttgaaaagcaatttataAAACTCTTTATAACAAGAGGTGACCTAGATAATGTTGCCATGTCTGCATTACAGCCAGTTTATCATCTGCGGTGCGGTCACATTAATATAGTTCATGGTAAACAGCTCTACGAACAGATAAAACCACATCAAAGCTCATCTAAGGGGAAAGGAAGTGTATTACAATTTCCTgctgagattaaataaaaaatgtaaccaaGTATAATATGTcataaacatatgtattttgGATACATGTATTATTGATACTGCCGATCCTTGCTGGAAGTCATCTGgggtcagttgcataaaaccaTATTAGATTAGCCTAAAtcattagactagtcttaattTGTTAGTTAGACAgctgcataaaaaataagactGACTAAGGCTaaaagttagcctcctcaccCAAAGGCTATCTTACAATAGAAGTCTTTCCATGGAAACAGTTTGCCTGAGTCTACAAcactgtcactgatgctgacGGGCGGAGCCTCCCATTGGCTCTAATACAATCCGCTGTCCCACCCACCGGCAATCCCCCAAAACATAGAGACTCCTCCCCCAATAACCAATCCTGTT

Function

GO: NA

KEGG:

id description
K00251 AKR1D1; 3-oxo-5-beta-steroid 4-dehydrogenase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141317 lncRNA upstream 196900 22455762 ~ 22455964 (+) True G112832
TU141288 lncRNA upstream 341404 22294688 ~ 22311460 (+) False G112807
TU141289 lncRNA upstream 351935 22294688 ~ 22300929 (+) True G112807
TU141281 lncRNA upstream 394478 22257550 ~ 22258386 (+) True G112802
TU141232 lncRNA upstream 441072 22137485 ~ 22211792 (+) True G112762
TU141360 lncRNA downstream 10704 22682960 ~ 22683187 (+) True G112868
TU141460 lncRNA downstream 191729 22863985 ~ 22864508 (+) True G112938
TU141465 lncRNA downstream 205133 22877389 ~ 22881356 (+) True G112940
TU141481 lncRNA downstream 280924 22953180 ~ 22956200 (+) True G112954
TU141482 lncRNA downstream 284992 22957248 ~ 22958605 (+) True G112955
AMCG00006842 mRNA upstream 205442 22400094 ~ 22447422 (+) True AMCG00006842
AMCG00006843 mRNA upstream 253019 22355580 ~ 22399845 (+) True AMCG00006843
AMCG00006835 mRNA upstream 639033 22004352 ~ 22013831 (+) True AMCG00006835
AMCG00006834 mRNA upstream 653138 21996225 ~ 21999726 (+) True AMCG00006834
AMCG00006836 mRNA upstream 658536 21937375 ~ 21994328 (+) True AMCG00006836
AMCG00006849 mRNA downstream 16928 22689184 ~ 22714844 (+) True AMCG00006849
AMCG00006850 mRNA downstream 82432 22754688 ~ 22772629 (+) True AMCG00006850
AMCG00006851 mRNA downstream 102464 22774720 ~ 22805606 (+) True AMCG00006851
AMCG00006853 mRNA downstream 137047 22809303 ~ 22817363 (+) True AMCG00006853
AMCG00006852 mRNA downstream 154727 22826983 ~ 22862037 (+) True AMCG00006852
TU141018 other upstream 1449663 21142865 ~ 21203201 (+) True G112600
TU140974 other upstream 1603826 21048336 ~ 21049038 (+) True G112567
TU140941 other upstream 1714694 20937497 ~ 20938170 (+) False AMCG00006811
TU139270 other upstream 9609416 13011184 ~ 13043448 (+) True G111197
TU138516 other upstream 13085513 9566213 ~ 9567351 (+) False AMCG00006565
TU141703 other downstream 1359857 24032113 ~ 24036112 (+) False AMCG00006878
TU141783 other downstream 1632523 24304779 ~ 24335916 (+) False AMCG00006884
TU141848 other downstream 1836747 24509003 ~ 24587119 (+) False AMCG00006893
TU141973 other downstream 2945811 25618067 ~ 25618445 (+) True G113369
TU142014 other downstream 3142799 25815055 ~ 25832942 (+) True G113400

Expression Profile