RNA id: AMCG00006845


Basic Information

Item Value
RNA id AMCG00006845
length 774
RNA type mRNA
GC content 0.48
exon number 6
gene id AMCG00006845
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 22534401 ~ 22543403 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTGCGTTGTGGGATACAGTTCCTTGGAAACCTTGCTGTTGGAAACCAGGTTTGCAAAGATGACATCTGGAAGCACACTTTCCCACATCTTTTCCTGAAATTCCTCGACCACATTGACGAGAAGACGTCAGCCTACTGCTCCATGGTGCTCTACACCTGCTTAGATGCCGAGAAAGTGGGAGACATCATCCTCAGTGAGGAAGTAGCAATGAAAGTGGTCAGCCTATGCATCAAACAGCCGGAGCTTGACTGGGgtgTCTTGATTGTTACACAGCATTTCCTGAAATCCTCCGAGCTTGTTGAAAAGATGTTTGCAAGGCTGAACAATCAGGAAAGGATCACATTATTAGACCTGGTAACTGCACAGCTAGGGGAAGCAGGCGAAGCCACCGAGGAGTCTGGGATCCCAGTGCGACTGGCCGAGTTCATAGCATCTTGCTTTGAGGAGCATTGCAAAGCAGTGTTAACATTAGTGTCCGATTCCTCTCCTAAACATGAGGAAGCTCTCACGGTGATGAGGCTCTTAGACATCCTCTGTGAGATGACATCAGACAACAAAGCCTTTATGGACCTCCAGAATTATTCAGAGCTACTGAAAACCACCGTTgAACTTTTGAAAGAAGTACACTTTCTGGGCAAAGCAAACCGCAACATTTTCACGACTGTTCAGAACTTCTCGGACATGGGCGCCCCCTCGCACCCTGTGGTGGGGTTCAAAGCTCAGCTCATCAGGCTGATAGGGAATCTGTGTCACAACAACGCAGACAACCAGAAC

Function

GO: NA

KEGG:

id description
K19323 ATXN10; ataxin-10

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141291 lncRNA downstream 276427 22257549 ~ 22257974 (-) True G112809
TU141271 lncRNA downstream 385508 22147790 ~ 22148893 (-) False AMCG00006841
TU141258 lncRNA downstream 476265 22054622 ~ 22058136 (-) True G112783
TU141146 lncRNA downstream 681389 21810365 ~ 21853012 (-) True G112705
TU141004 lncRNA downstream 1438093 21095341 ~ 21096308 (-) True G112589
TU141373 lncRNA upstream 126457 22669860 ~ 22670883 (-) True G112878
TU141401 lncRNA upstream 222870 22766273 ~ 22772685 (-) True G112903
TU141480 lncRNA upstream 398056 22941459 ~ 22941670 (-) True G112953
TU141483 lncRNA upstream 409782 22953185 ~ 22955077 (-) False AMCG00006854
TU141507 lncRNA upstream 610465 23153868 ~ 23154903 (-) True G112979
AMCG00006840 mRNA downstream 304142 22207663 ~ 22230259 (-) True AMCG00006840
AMCG00006839 mRNA downstream 331890 22199966 ~ 22202511 (-) True AMCG00006839
AMCG00006841 mRNA downstream 336737 22130495 ~ 22197664 (-) True AMCG00006841
AMCG00006838 mRNA downstream 406099 22058244 ~ 22128302 (-) True AMCG00006838
AMCG00006837 mRNA downstream 485223 22019892 ~ 22049178 (-) True AMCG00006837
AMCG00006848 mRNA upstream 44257 22587660 ~ 22589738 (-) True AMCG00006848
AMCG00006846 mRNA upstream 48696 22592099 ~ 22607383 (-) True AMCG00006846
AMCG00006847 mRNA upstream 82998 22626401 ~ 22651517 (-) True AMCG00006847
AMCG00006855 mRNA upstream 338111 22881514 ~ 22928405 (-) True AMCG00006855
AMCG00006854 mRNA upstream 409773 22953176 ~ 22958306 (-) True AMCG00006854
TU140946 other downstream 1584565 20854057 ~ 20949836 (-) False AMCG00006813
TU140776 other downstream 2298195 20235856 ~ 20236206 (-) True G112420
TU140642 other downstream 2898476 19633237 ~ 19635925 (-) False AMCG00006774
TU140430 other downstream 4193191 18339270 ~ 18341210 (-) False AMCG00006754
TU140351 other downstream 4900956 17632891 ~ 17633445 (-) True G112059
TU141596 other upstream 860772 23404175 ~ 23407207 (-) True G113050
TU142176 other upstream 3956612 26500015 ~ 26500681 (-) True G113530
TU142323 other upstream 4859197 27402600 ~ 27527348 (-) True G113645
TU142485 other upstream 5723859 28267262 ~ 28292598 (-) False G113775
TU142484 other upstream 5748052 28291455 ~ 28292598 (-) True G113775

Expression Profile