RNA id: AMCG00006850


Basic Information

Item Value
RNA id AMCG00006850
length 6705
RNA type mRNA
GC content 0.37
exon number 4
gene id AMCG00006850
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 22754688 ~ 22772629 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCCCTCCTTTCTGCAGGCATTGGCTATGCAACACAGGTCATTGTAGCTCTCCTCAATTTCTACTACATCATCGTGCTGGCCTGGGGAATTTTCTATCTGTGTAATTCCTTTACATGGGACTTACCGTGGGCCACCTGCAACAACTTCTGGAATACAGGTACCCAAATTTTCTTCTCTTATGCCATTTGCCTGGGCTGCCTTACTGCTCTGGGGAGCTACAATAAGTACAATAACAACTGTTACAGGGCGGGATGTACATCTTCCAGCTGTTTGATTATTATGCAGCCAGTGGGATGTGCCTCCTCTTTGTGGCTATTTTTGAGACAGTTTGCATTGCATGGATTTATGCGCATCCAGCAGCTAATCAGACCTTCTGACGATCTCCCCAAGACCAAGAAGGAGCAGGAGAAGCTTCTGGCCATCTTTGCACCTGATGGGGGTGTACACCAGCAGGGGGAGCCCACCAAAGAGGGGTACTTCCCTGTCCCTGAAAAGGAGTCCAACTGCTAGAGCCACAACTAATAAAGCCTCCTGGTCTGAATAAAGCAGAAGGCTGCTTCCACTTCTTCAATACCTCAAACTTGACATCCAAAAACCAGAtatgcagaaagaaagaaaaaaagaatcgaagaaagaagaaaacaacgTACCACACCTGTGAAGTTTTGTATTAACTATTGTGTTGTCAGATACAGATTGTCGTTGTTGttgattaattttatatttactgaTACTTTAGTGGAGCAAGCTGCAAGCGGAGTTGGAAGCTTACTGTGGGCACAATATCATCTCAAAAAAGGAagtcttcagttttgtttttctttacatttttcactgggTTGGCTTCCTATTTTTTTATAGTCATTACAGTGCCTTTAGATATTCATTGGTTTGTGTTAGATGTTGCGAATGTCCCCCAGTGAAGTTCACCTGACATGGAAGAATCGTGATTGGAAACCACttgatgtgtttttcaaaatgagaGAGCAAGTTTTCTTTAAGTggtattgttttgttgaatttgaggaacatttcaaatatttaaaaagaaacatgctatatatttattcttctaGATTAAGAGAGATATGTTATTACATGAAGAACACCAACAGTACTTTATACATCCTTAGCTTgaatttctgtttctctctgtacaGACATTTGTGTGAAAGTTTACCACGGATTTGGAGGTTGGGCTCCAGAACTGTAGGTTGGTATGTTAAGAAGAAAGGATTGGTGGACTcttgtcatttaaaacattggATTAATGTCTCCCataaagaaaaaatctaaacaaaatcaaatgacaaaacagaaataGATTCCCGAAAGGctcaatcatttaaaatctcTGCTCAGAGTGCTGGTTGAGTCCTGTAGTCCAACGAACGCAGGTTTGAATATGGGCTCTGTCATTGGCGATTCCCATATTAGAAATGCTGATTCAAATATGTTAATCACCAAGGGACAGCATGCTATTGGCTAAGTGCCATCTTCCAAGGTTGGAGTTCATTTGGCTtccttcaaaatgaaaactactgtggTTTACAGGGCCCTTTTGTCTGCAGCATGATCAGACAAGAGCTGTGCAGTACCCACATCTCTAGCATTCGTTGCTGGAGTTATAGGGAGGAGCTGAATCACAAATTAAGAGGATATAAAAGGAAACAACGGTTGCAGATTTCAAATTTATctttaaatcaatgaaaaaggaaaggatAAGATGATGAAAGTCCTGCACCTCTGCCCATCCAATTTAATAGCTTATTAACTCCCTGATCGTGATTAATCTCTCAGCAAGAACACCACcgtgtgttttcattattgttcaAGGAAAGTCAAAGTGATGACTCCTCCTTCTGCTCATCTCTCTGGTATTCGCTGAGAGAAGTCTCCAGTTCAGAGTGCATGGACTCTGACATGTACACCTGTAACAAAGCCACCCGGCTGCTCTAAGGCAACACCACTGTGATTAAACCTGGCTTGGTAACTACATTAAGTATGACATCATGCTAGGTGCCCAACTCACTAGCTGCTGATGACACTTTTATTCTCTGTCCAAGAAATGGGGCTACagttatctttctctccctaATGATACATATGAAACCCTTTAACATGCACCTTATATCATTAAAGAGGAAGGAGGCCAATTTTGCTTTGCTTGATATGCGCATCCATTCAACAAATCTACATATGAATCTAGTTGCCCATGAATGTATGCCAGGCTGCTTCTTTTAGATCCATAAGCTTTGTGCAAGTCATGTGGCACTGCCTCCAACTAATGTAAAACTGGTGCCGGGATTGCAGTATCTTATTGCTGGAACCTTTAAAAAAGTCTTCCAGCTACACCTCCAAACCATTGATTGCTTTCCTTGTGTTTCACCCATCCCATCTTCCTTGTGCACTTCAGCATTTTGATTGGCCAACTTCCAGCTCAGTCTCCTCTCGTGCAACATGCTGTAGAGAAGAGGAGAGTACATGGGTTATTAAACAGTAGCAGCATTTTCCAGAGTGACTGCTGGAGTCATTCATATAAGGCCAGGTTCTCTATTTGCACCATTTTCTAAGGGAGATTTGGCATCAGTGTGTTTGCAAAGCTGTGGATTATCCAATGaggcatttccaaaacaaaacaggatattttgtaaacacatgaaaaagatctaatttagaaaagaaaagctcTGTTTTTGGGGAGGAAAGAGCCATAAGACTTGAAAGTGTTATGTGGCATAATTGCAAAACTATAGGATactattttaataagaaaataattgttttacatttgttacaCACCAAGTTATAGTACACCAGAGTTTACAACATAGAGATCCCTGCTCACAAGTGCCGTTCAGCTATTCCTTTGTATGGGAAAGCTTGCATGCCTCATAATAGTTTTATATGCATTAACAATCTTTGACATTTCACACAACTGCATCTTTGCAGGTGTCCTGTTACTTGGGTCATATCAGCAGGGCTAACtatatttactgttaaaaataggaaactatATGTGTAACCAGGGACTCTTGCATGGACTGAAACATGTACACTACATGCCATAATCAAGTTCATTTTTGATAAACTAGTcgtgttttatgaatatgacccatattattttcaaaaggggcAAGAAGATGTAGGGGATTttcaaaacatgatttatgtaaccaaattattttatattatctttAAAGGAGCATAAAGATGACACATTACATCCTAGTGAGTATAATATGTgacttgaatttgtttttaggGATTACTTTTGCCACCTTGTTTCTTACTTGGTACATACTCCTATGTGTCTTATACACTAGTGTTTTGTTATGCAGAATGAAGCTGTATGGCACAGTCTTTAGAACATCCTAGATCAGCTATAATATTCTGAAAGAATTGTAGAACTTACTTCCTTATCATACGTCTCTGGGATCATTGCAGAGGTCCTGTTTCCAAGGGAACAATTAGGTTATACTGGAAACAACAATCCAAGGAGAACCGTCCCAGAATAACAAAGTCCACTTTTTGTGCACCTGTAAGCCTAAATGGGGAAAAGCATCAAGTAAGACATTctaaataaagtaaaagaaGCTGTCAATTCGCCTAATATTCCATATTTATTGGATGATACTTGCCTTGAAAGAACATgatcatgtattatttttgattaactCTCACACAAATGTCTGTTGTTGTATGATACTGTTGTTTTTAGCTTTTAGATTTAAGCAGATCAATTGTGATTACGGTCCTTTCTTTAAGTCATAACCTTTCCAGTCACTAATTTTTAGTGATAAGTTGACAGATTGTTGTCTATCGGTTTTTACAGATATACTGACgtaggcatgtttttttttttttttaatctcatctTGCTTTTTTATATACCTAAAGATAACTTGAGGATATGCAAAAGCACATTAATTACAACCTCTCTATGGATTTGTTGTCAAAAGGAGGCTTGATTGTGGTACTTTGAacttttttatggttttgttttttacagtttttgtttttctacaaatTAATGGTGaactataatatacatttcatgcaCTTATTCTTGTTTCTGTTTGCCTTTGATGAAGGACTGAATGCATCTTCACGTAGGttccatgttttgtttccttacACCGATTTATAGTTTATACTCTTGTGGTTTTTGTGGGCAGAATAGGAAAAACCTAGCTATATATGGCTGTATATGGCTATACACTAaatgaaagagacagaaaatatTCTCACTATAAAATTGGGTCGAAGGAATCAATGCAAGTTAATTATGATCATATTCCAGTCTAGACTACCTGAGTGTGTTACTGTAACTGATGTTGCCATCTCTCCGTGTTTCAAGAAGttgattatttttctcattgtcttttttattttatttttactaaccTGTGTTGTGCAAAACTGGctgttattttatgtgttgAAACAAGGGAGTATTACAATTGCACATATATAAAAAGGGCAATCataaacattcatattaaaatggaCAAAAAAGACTCAGATTACTGGTTAAATCCTCCCAGAGGAATATTAACTTCACAAGCGTTGGGTTCTTAAAGCTCAGTGAATCTTGGTGCACCAAGAGCTGGCTTTGTCTGGAGATTTATTGGGTTTGAAAGCTGAAAGGCTAAAAGGCCAGGACAGAATTCTTCCTGGCTTAGAATGTCCGCTGTATTTGCCTGTTGCTCTTTTGATTGGAAATTATTAGTTTCCAGGTTTGGCCAGTGTTGATGGGAGCAAGATTGATGTTGTTGGCACCGAGGTTGGGGCCTCACACTTTCCTGAAGAATCCAGTCCCTGTACTTCCTTGATTCAAGTTTAATCTCTGTGAATTGAGACCTTAAAAGGAAAACCCGCATGGACTGAATGGGTCgatcttttattcaaatccAGTGTCTTCAGTTTCCCAAGACCTTCTCTTCCACACCTAGGCCAGCTCGCCTTTCACTGGCAGGATGTTGGTCTGGCTTGCACAGTGCCTTTCTGTTcagctgggtgtgtgtgtgtgtcagtctccTTGTCACAGCTTTCATTCGGCTGCATTCAGGACTTACTCACGGAAAGTGCACACATTTCCGAAAAAAAAAGCTACGAAAACTCAAAAGCTTGCCTCGGCTACAATGCTACAATGGATTGTTTTGTATATCAGGATGCTGGTAAGGATAGAAACACTACATGCGTGGATTGCATACAGATAGTAATAGTTCTAACGcattactttacagcatttcatattaaaatcaaactgtTACCAAAACCTGGAACCTGGAATAGATTACATTAAAGACAGCTTTGTCTCGGTTAGAGATTTTGTATtggatttaattaaaccatgaacagtatttttagattaaatgtatcaatatgGAGCGGGATATACACAAGCAAATTTTTCTAGGATATCTGACACAAAGCTGAAACTTAAAATTAAGTTCGGAAATAGCTACATGTACACCGGAAAACTGACAATTACTGTGTTTAAAGCAATTTAATGATGGTCAGTTCttgagaaaaaagaagaaaaaaaatctggcaCTGCTTCAGTAACTCGAATTATTTTGTGTGAGAACCTGTATGTAGCTTTGCTATAGCAACAGGCCTGAAGCATTTCACTGAGTTTCTGGAGCACATAATTTACCTCTGCCAGTGATTTCCCAAAAGTATATTCTGCAGACCTTACATCACATGAACACTGTctaacaaataagaaaaaccGATAAAGCGCAACATTTCCTAGGAGTCCTTTTTAAGTTTTAGTTGGGCTTTAGTCTAATTCATTTGACCATTTGTGGCTATGTGGTCCTCTTCTGttactatttaaaatgaaaaatatgagtGCTTTATTCATGTTATCTAAAaactttatactttatactactttatacattttccacaaCTCTCTACTGCAGTGGCTTGATTTAAATTACCACAAAGAATTGAAAGTGTAAAAGTAATGATGTTGTTACGATTAATATGCACACTGCTGGAGTTTCGTAAAAGCACAGGAACCTGAACTACTGCGAATTATATTGAAGAGCTGCATTGTGGATCCAAGATGTCAGCATCTCTTTTGCACTGttatgttaaaatacatatggGTTAAAATTCAGGAAGATTAGGTGATGAAGGAGTTTGATACAGTGTAGCGCAAAACCGCATAACAGGCATTTGCTAAAGTGCTCATAGCCGTCACATATAAAAAGTATaactgaaattataaataaatgtaaatctgttttaatgATTATATCAATATGCTGTACCATGTGACAATTTACTCTTTTCTTTAAACTGCAGGAATATGAGTCACTCATGATTAAAACATAGTTGCTGTACACATTTGCTTGCCTCGTGATATGTAAGATGTGAAggattgttttataaaaaataaagtaacaatTTTGTCAATTGTCTTCACCAATTATAATTACACTGAAGACATGTTAATTCTATTCAGATGAGTTGCATGAGTGCCTCCTAAGTTAGAAAAGTAGACATCTTTCTATTAATTGTCTGTCGTCTTGCCTTTTCATATACAATGTTTGAAAGGCCCCAAGtgtatttgttaaacatttGCTCTGTGAAATCCAGAAATTGTGATTGGTTTCTGCAATTAGAAATCTGTATGAAATGTGTATAACAAAAGcagatatacaaatatatttataaactcaTAAAGAT

Function

GO: NA

KEGG:

id description
ko03050 Proteasome
ko05169 Epstein-Barr virus infection

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141360 lncRNA upstream 71501 22682960 ~ 22683187 (+) True G112868
TU141317 lncRNA upstream 298724 22455762 ~ 22455964 (+) True G112832
TU141288 lncRNA upstream 443228 22294688 ~ 22311460 (+) False G112807
TU141289 lncRNA upstream 453759 22294688 ~ 22300929 (+) True G112807
TU141281 lncRNA upstream 496302 22257550 ~ 22258386 (+) True G112802
TU141460 lncRNA downstream 91356 22863985 ~ 22864508 (+) True G112938
TU141465 lncRNA downstream 104760 22877389 ~ 22881356 (+) True G112940
TU141481 lncRNA downstream 180551 22953180 ~ 22956200 (+) True G112954
TU141482 lncRNA downstream 184619 22957248 ~ 22958605 (+) True G112955
TU141602 lncRNA downstream 736520 23509149 ~ 23554741 (+) False AMCG00006865
AMCG00006849 mRNA upstream 39844 22689184 ~ 22714844 (+) True AMCG00006849
AMCG00006844 mRNA upstream 82432 22652864 ~ 22672256 (+) True AMCG00006844
AMCG00006842 mRNA upstream 307266 22400094 ~ 22447422 (+) True AMCG00006842
AMCG00006843 mRNA upstream 354843 22355580 ~ 22399845 (+) True AMCG00006843
AMCG00006835 mRNA upstream 740857 22004352 ~ 22013831 (+) True AMCG00006835
AMCG00006851 mRNA downstream 2091 22774720 ~ 22805606 (+) True AMCG00006851
AMCG00006853 mRNA downstream 36674 22809303 ~ 22817363 (+) True AMCG00006853
AMCG00006852 mRNA downstream 54354 22826983 ~ 22862037 (+) True AMCG00006852
AMCG00006856 mRNA downstream 376377 23149006 ~ 23157435 (+) True AMCG00006856
AMCG00006857 mRNA downstream 434564 23207193 ~ 23282722 (+) True AMCG00006857
TU141018 other upstream 1551487 21142865 ~ 21203201 (+) True G112600
TU140974 other upstream 1705650 21048336 ~ 21049038 (+) True G112567
TU140941 other upstream 1816518 20937497 ~ 20938170 (+) False AMCG00006811
TU139270 other upstream 9711240 13011184 ~ 13043448 (+) True G111197
TU138516 other upstream 13187337 9566213 ~ 9567351 (+) False AMCG00006565
TU141703 other downstream 1259484 24032113 ~ 24036112 (+) False AMCG00006878
TU141783 other downstream 1532150 24304779 ~ 24335916 (+) False AMCG00006884
TU141848 other downstream 1736374 24509003 ~ 24587119 (+) False AMCG00006893
TU141973 other downstream 2845438 25618067 ~ 25618445 (+) True G113369
TU142014 other downstream 3042426 25815055 ~ 25832942 (+) True G113400

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00048216 True 1848 mRNA 0.52 14 NC_007136.7 1695547 ~ 1720736 (-)