RNA id: AMCG00006853



Basic Information


Item Value
RNA id AMCG00006853
length 222
RNA type mRNA
GC content 0.54
exon number 2
gene id AMCG00006853
representative True

Chromosome Information


Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 22809303 ~ 22817363 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGACGACCAGCACCCCAGAAGCGGTGAAGAAATTGGTGGAGAACATGCAGACGGATCTGCGCTCGCTGTCTATGGAGTGCAAGAAGAAATTCCCCCCCGTCAAAGAGgccccctcctctcccttcACCTTTCATGACCCCAAGGAGATGTTCATGAAGTACACCTATGCCCCCTCTGTTCCTCGCCTCATCCCACCTCCAGGACtgctaaaacaaacatga

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU141360 lncRNA upstream 126116 22682960 ~ 22683187 (+) True G112868
TU141317 lncRNA upstream 353339 22455762 ~ 22455964 (+) True G112832
TU141288 lncRNA upstream 497843 22294688 ~ 22311460 (+) False G112807
TU141289 lncRNA upstream 508374 22294688 ~ 22300929 (+) True G112807
TU141281 lncRNA upstream 550917 22257550 ~ 22258386 (+) True G112802
TU141460 lncRNA downstream 46622 22863985 ~ 22864508 (+) True G112938
TU141465 lncRNA downstream 60026 22877389 ~ 22881356 (+) True G112940
TU141481 lncRNA downstream 135817 22953180 ~ 22956200 (+) True G112954
TU141482 lncRNA downstream 139885 22957248 ~ 22958605 (+) True G112955
TU141602 lncRNA downstream 691786 23509149 ~ 23554741 (+) False AMCG00006865
AMCG00006851 mRNA upstream 3697 22774720 ~ 22805606 (+) True AMCG00006851
AMCG00006850 mRNA upstream 36674 22754688 ~ 22772629 (+) True AMCG00006850
AMCG00006849 mRNA upstream 94459 22689184 ~ 22714844 (+) True AMCG00006849
AMCG00006844 mRNA upstream 137047 22652864 ~ 22672256 (+) True AMCG00006844
AMCG00006842 mRNA upstream 361881 22400094 ~ 22447422 (+) True AMCG00006842
AMCG00006852 mRNA downstream 9620 22826983 ~ 22862037 (+) True AMCG00006852
AMCG00006856 mRNA downstream 331643 23149006 ~ 23157435 (+) True AMCG00006856
AMCG00006857 mRNA downstream 389830 23207193 ~ 23282722 (+) True AMCG00006857
AMCG00006861 mRNA downstream 467375 23284738 ~ 23289336 (+) True AMCG00006861
AMCG00006860 mRNA downstream 486092 23303455 ~ 23320773 (+) True AMCG00006860
TU141018 other upstream 1606102 21142865 ~ 21203201 (+) True G112600
TU140974 other upstream 1760265 21048336 ~ 21049038 (+) True G112567
TU140941 other upstream 1871133 20937497 ~ 20938170 (+) False AMCG00006811
TU139270 other upstream 9765855 13011184 ~ 13043448 (+) True G111197
TU138516 other upstream 13241952 9566213 ~ 9567351 (+) False AMCG00006565
TU141703 other downstream 1214750 24032113 ~ 24036112 (+) False AMCG00006878
TU141783 other downstream 1487416 24304779 ~ 24335916 (+) False AMCG00006884
TU141848 other downstream 1691640 24509003 ~ 24587119 (+) False AMCG00006893
TU141973 other downstream 2800704 25618067 ~ 25618445 (+) True G113369
TU142014 other downstream 2997692 25815055 ~ 25832942 (+) True G113400

Expression Profile