RNA id: AMCG00006854


Basic Information

Item Value
RNA id AMCG00006854
length 3949
RNA type mRNA
GC content 0.38
exon number 2
gene id AMCG00006854
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 22953176 ~ 22958306 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGCAGCACAGAGAAGCAACAGGACTCTGCTTCTCCGACACTTTGGCGAGCTGGGGAGCCGCAGGGACGAGGAGAGGACCATGCACTTCCCAATCAACGTGCTCTTCTACTCCGCAGGCATGCGCAATTTCACTGATCTTGATAACCAGTCCCTGCAGGTGAGCGCCAAAGACGAGCCCCTGATCAGCAACCGCAGTGGTGCCAAAAATGAAAGCGACGACACCTATGGGAGAGACGAATATGTGGCCAAACTGGAGATTACACTCCTCGGCATCACCTTTCTGGTGGCGGTCATCGGAAACCTGAGCGTCTTCTTGGCGCTGTACAAGACCAAGAAGAAGATGTCCCGGATGCACCTTTTCATTAAGCACCTGAGCCTGGCCGATCTCGTCGTGGCGTTTTTCCAGGTGCTCCCGCAACTCTGCTGGGAAGTGACCTTTCGCTTTTACGGGCCAGATTTCCTCTGCAGAATTGTGAAGCACCTGCAAGTTTTAGGCATGTTTGCCTCGACCTACATGATGGTCATGATGACTTTGGACCGCTACATAGCCATCTGCCACCCGCTGAAGACACTGCAGCAGCCCACCCAAAGATCCTACTGGATGATCATCAGCACCTGGGTGTGCAGTCTGGTGCTCAGCACTCCGCAGTATTTCATCTTCTCCTTGAGCGAGATCCACAATGGCTCGGGCGTCTATGACTGTTGGGGACACTTCATCCAACCATGGGGTGTCAAGGCGTACGTCACATGGATGACCCTCGGTATCTTCCTCGTCCCCGTGGTCATCCTCATGGTGTGCTATGGCTTCATCTGCTACAGCATCTGGCAGAACATCAAGTACAAGACTCAGAAGAACGCCGGGGAAACTGCGTCCAAGAACGGAATGATGGTCCCATCTTCTGTGAGCAGCATCAGGACTATTTCCAGAGCCAAGCTGAGGACGGTGAAAATGACTTTTGTCATTGTGCTGGCTTACATTGTGTGCTGGTCTCCATTTTTCGTTGTGCAGATGTGGTCGGTCTGGGACGAAAACTTCAGCTGGCACGAGTCCGAGAACACGGCCGTGACGCTGACGGCGCTGCTCGCCAGCCTGAACAGCTGCTGCAACCCGTGGATTTACATGATCTTCAGCGGGCACCTTTTGCAGGATTTTGCCAACTGCTTCCCCTGCAGCCGGCAGATGAGGCCGAGGTTTAAGAAGCAGGACTCGGACAGCAGCCTGCGCAGGAACACGCTCCTAACCAGGATCCACAACCGGAGTCCCGACTGCAGCATCGGGACCTGGAGGGACTACGACAACTCCCCCAAATCCTGCAGGTCCATCCCAGTTGAATCCTAAAGCAATCTCTcgaagtgtttatttattttgtatttatttatttaactgataTACACTTGCAAACCGACCGACTTTTAAAGATCGTAGAAATAGCCTCCCACGCCCccaaaggaaaaacacaatggGGGGAAAATTTCGTTTTATAAGGGATTACAGATAAAACAGTTGaacagtttaatgtatttaaagtgtcAGTACGTAGGAATGTATACATCATTCAACGAATTGTTACTAAATGGATTGTTTTCTTGTCCAATGTTGAAAGACCTGAAGTTTTCCACATATTAAGATGCAATTTAGTTGATAACTGATTGGACaaaaaattgaatacaaaaacatctgTAGCTCTGGAACTTTGCATTTGTGTTATTGGCTGTATTGTAACTTGATTTTACCTTTGACAACCTGCTACCTGTTACTGTCTTGTAAGTCAGATTCAGGTTTATCATGAGAATATGcacttgtttaatatttttttatttcttctcgcAAGGTATGCTTTAGAATTGCACAGCTGTTTTTTCTACTTCATTACCTGATATTGGTTTACTCTGTATATTCTATAAaacgttttcattttaaagtagcctatctaatatttaaattcacacaATATCCATTTGAACAGAAAATTATTGTATGTACctatttttcaaattaacatatatatatatatatatatatatatattcgatTCAAGAGAAAATGACAATTGTTACTTACTGGAGTACATACACAACTACCAGAGACACAGAAAATGTGGTAGCTATGCAAACACAAGTGAGGAAGAATGATGCGGAAAATAATACGACAACTGTGGTTGAAAGTCCAAAGTAAATACTTTATGAATAaaattccattattatttagcatAATGCAATATTTTCACCGAGGCAACTTCCAATCCCAAAACACGCAGCTGGACACATGTAAACCAGAAGAAATAGAGAAGTGCTGAAATAGATTTTTCTGCTTTCCCGAGTCACCTAAAATAAGcccaactgaaataaaatgtatgtatccaATACGTTATTAAGACTATATAAGTATAtggttaatatatattattaagacTATAAAGTCTTAATGGTTGTCTGAAGATTCATATTTACAGGGGAATACTTAAAATGAGCTTTAGTTTTGCACTCGATTTAATGTCTTAAATATAGTTATAGaaatccaaaaaaaaacagctcaacAGAGAGAactattttataatgaaataagCAAAGCTTCAAGAAagttttacttttcatttaataaaaccaTAAGTATTTAGAATGAAGATTTTCACCAGCTTATCTACATACCCTTGACAAAATAGTTTAATCAAATGTGAAAACGTTACTGGACCAGCAGAATTACTTATAAAACATTTCCTGTCCTActtgactgaaaacaaaataccaaattaattatctttaagTTTCTGCATCTTTCAAATTActtattacttttaaaacttaGTGTTATGACAGAAAGCAAAATTTATTGAGGAACAAAATGTCCAACATAACTCAAGATTGTGTGACTCATATGTGGAGgttaagtttgttttaattgctttatttgtttaatggttGCTATTTGCTTTGCAAGGGcctatttattgcattttagttGTAATCAGTGTGAGTAGAAAAAAGACTAACCaagaatggttttatttttaaaacactatgaTATGTTAAGGaagatttttacaaaatattttgtaaatgttattgtaTCAATCTGGCATTCATATTATCGCTTCATAACAAAAGGATACATTTagtaatatttgtgtatttacacaCTCTGTATTTAATTCCATCTCATCTTCATTAAGCCTCAAAAATACATCTTAATTGTTTACATAAACTGAAATTCCCACATGAGGTTATCGTGACctttcagaataaatattttgtgagAGTGAGTCTTACAAGTAATGTATTTCTCAATcactgacaaataaatcaaGCTTGTCATAATGAATATAAAAGGTCTATGCCATAGcgtagtattttgtttttaatttaattcaaaaattACTTTTTGTGGAGGAAATATGTCAGTTATCTGTTGTATCCCAAGTGAAAAGCTTGGGATACAATATCTTATTGCAAGATATTTTCtcgtattatatattttatggcATACAACTATTTTGTGTTGGTATGTTTTGCTCaaatttttgttacattttaaatatattgtatgtagcacatttgtttcttaatatcACCAGATAAGCATGTGTATTGCCAAAGATgattcagtgatttatttaactgtttagATGTTACCctaaatcctttttttattattatttgtccgTTATGAACTTATGAAACCTGAGAAAAGGGAGATATTAATTGtaaattgtcattgtttttaaaactggcATAGTTAAAAACTTTCTTTCTGAATATTTCTAGTATGCTAAAAGTTAAGGACATATGTACTGACATTTTTAGGGAGGTTGAAATATTTTATCAAGCATGAAAATCTAATGCACTACACATTATAGGACCATGCAAATATTTTTGTAGGTAAATAtttctgaagaaataaaaatatattggaaatacatgtttaaataaatgcattgctaCAGCTTTTACA

Function

GO: NA

KEGG:

id description
K04226 AVPR1A; arginine vasopressin receptor 1A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141480 lncRNA downstream 11506 22941459 ~ 22941670 (-) True G112953
TU141401 lncRNA downstream 180491 22766273 ~ 22772685 (-) True G112903
TU141373 lncRNA downstream 282293 22669860 ~ 22670883 (-) True G112878
TU141291 lncRNA downstream 695202 22257549 ~ 22257974 (-) True G112809
TU141271 lncRNA downstream 804283 22147790 ~ 22148893 (-) False AMCG00006841
TU141507 lncRNA upstream 195562 23153868 ~ 23154903 (-) True G112979
TU141550 lncRNA upstream 362771 23321077 ~ 23321771 (-) True G113013
TU141551 lncRNA upstream 364627 23322933 ~ 23323151 (-) True G113014
TU141619 lncRNA upstream 589491 23547797 ~ 23554739 (-) True G113066
TU141622 lncRNA upstream 609849 23568155 ~ 23569274 (-) False AMCG00006866
AMCG00006855 mRNA downstream 24771 22881514 ~ 22928405 (-) True AMCG00006855
AMCG00006847 mRNA downstream 301659 22626401 ~ 22651517 (-) True AMCG00006847
AMCG00006846 mRNA downstream 345793 22592099 ~ 22607383 (-) True AMCG00006846
AMCG00006848 mRNA downstream 363438 22587660 ~ 22589738 (-) True AMCG00006848
AMCG00006845 mRNA downstream 409773 22534401 ~ 22543403 (-) True AMCG00006845
AMCG00006862 mRNA upstream 328950 23287256 ~ 23302174 (-) True AMCG00006862
AMCG00006864 mRNA upstream 417061 23375367 ~ 23376805 (-) True AMCG00006864
AMCG00006866 mRNA upstream 610578 23568884 ~ 23571133 (-) True AMCG00006866
AMCG00006873 mRNA upstream 672733 23631039 ~ 23752269 (-) True AMCG00006873
AMCG00006876 mRNA upstream 891339 23849645 ~ 23868247 (-) True AMCG00006876
TU140946 other downstream 2003340 20854057 ~ 20949836 (-) False AMCG00006813
TU140776 other downstream 2716970 20235856 ~ 20236206 (-) True G112420
TU140642 other downstream 3317251 19633237 ~ 19635925 (-) False AMCG00006774
TU140430 other downstream 4611966 18339270 ~ 18341210 (-) False AMCG00006754
TU140351 other downstream 5319731 17632891 ~ 17633445 (-) True G112059
TU141596 other upstream 445869 23404175 ~ 23407207 (-) True G113050
TU142176 other upstream 3541709 26500015 ~ 26500681 (-) True G113530
TU142323 other upstream 4444294 27402600 ~ 27527348 (-) True G113645
TU142485 other upstream 5308956 28267262 ~ 28292598 (-) False G113775
TU142484 other upstream 5333149 28291455 ~ 28292598 (-) True G113775

Expression Profile