RNA id: TU141483


Basic Information

Item Value
RNA id TU141483
length 1893
lncRNA type sense_over
GC content 0.29
exon number 1
gene id AMCG00006854
representative False

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 22953176 ~ 22958306 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACAATTGTTACTTACTGGAGTACATACACAACTACCAGAGACACAGAAAATGTGGTAGCTATGCAAACACAAGTGAGGAAGAATGATGCGGAAAATAATACGACAACTGTGGTTGAAAGTCCAAAGTAAATACTTTATGAATAaaattccattattatttagcatAATGCAATATTTTCACCGAGGCAACTTCCAATCCCAAAACACGCAGCTGGACACATGTAAACCAGAAGAAATAGAGAAGTGCTGAAATAGATTTTTCTGCTTTCCCGAGTCACCTAAAATAAGcccaactgaaataaaatgtatgtatccaATACGTTATTAAGACTATATAAGTATAtggttaatatatattattaagacTATAAAGTCTTAATGGTTGTCTGAAGATTCATATTTACAGGGGAATACTTAAAATGAGCTTTAGTTTTGCACTCGATTTAATGTCTTAAATATAGTTATAGaaatccaaaaaaaaacagctcaacAGAGAGAactattttataatgaaataagCAAAGCTTCAAGAAagttttacttttcatttaataaaaccaTAAGTATTTAGAATGAAGATTTTCACCAGCTTATCTACATACCCTTGACAAAATAGTTTAATCAAATGTGAAAACGTTACTGGACCAGCAGAATTACTTATAAAACATTTCCTGTCCTActtgactgaaaacaaaataccaaattaattatctttaagTTTCTGCATCTTTCAAATTActtattacttttaaaacttaGTGTTATGACAGAAAGCAAAATTTATTGAGGAACAAAATGTCCAACATAACTCAAGATTGTGTGACTCATATGTGGAGgttaagtttgttttaattgctttatttgtttaatggttGCTATTTGCTTTGCAAGGGcctatttattgcattttagttGTAATCAGTGTGAGTAGAAAAAAGACTAACCaagaatggttttatttttaaaacactatgaTATGTTAAGGaagatttttacaaaatattttgtaaatgttattgtaTCAATCTGGCATTCATATTATCGCTTCATAACAAAAGGATACATTTagtaatatttgtgtatttacacaCTCTGTATTTAATTCCATCTCATCTTCATTAAGCCTCAAAAATACATCTTAATTGTTTACATAAACTGAAATTCCCACATGAGGTTATCGTGACctttcagaataaatattttgtgagAGTGAGTCTTACAAGTAATGTATTTCTCAATcactgacaaataaatcaaGCTTGTCATAATGAATATAAAAGGTCTATGCCATAGcgtagtattttgtttttaatttaattcaaaaattACTTTTTGTGGAGGAAATATGTCAGTTATCTGTTGTATCCCAAGTGAAAAGCTTGGGATACAATATCTTATTGCAAGATATTTTCtcgtattatatattttatggcATACAACTATTTTGTGTTGGTATGTTTTGCTCaaatttttgttacattttaaatatattgtatgtagcacatttgtttcttaatatcACCAGATAAGCATGTGTATTGCCAAAGATgattcagtgatttatttaactgtttagATGTTACCctaaatcctttttttattattatttgtccgTTATGAACTTATGAAACCTGAGAAAAGGGAGATATTAATTGtaaattgtcattgtttttaaaactggcATAGTTAAAAACTTTCTTTCTGAATATTTCTAGTATGCTAAAAGTTAAGGACATATGTACTGACATTTTTAGGGAGGTTGAAATATTTTATCAAGCATGAAAATCTAATGCACTACACATTATAGGACCATGCAAATATTTTTGTAGGTAAATAtttctgaagaaataaaaatatattggaaatacatgtttaaataaatgcattgctaCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141480 lncRNA downstream 11515 22941459 ~ 22941670 (-) True G112953
TU141401 lncRNA downstream 180500 22766273 ~ 22772685 (-) True G112903
TU141373 lncRNA downstream 282302 22669860 ~ 22670883 (-) True G112878
TU141291 lncRNA downstream 695211 22257549 ~ 22257974 (-) True G112809
TU141271 lncRNA downstream 804292 22147790 ~ 22148893 (-) False AMCG00006841
TU141507 lncRNA upstream 198791 23153868 ~ 23154903 (-) True G112979
TU141550 lncRNA upstream 366000 23321077 ~ 23321771 (-) True G113013
TU141551 lncRNA upstream 367856 23322933 ~ 23323151 (-) True G113014
TU141619 lncRNA upstream 592720 23547797 ~ 23554739 (-) True G113066
TU141622 lncRNA upstream 613078 23568155 ~ 23569274 (-) False AMCG00006866
AMCG00006855 mRNA downstream 24780 22881514 ~ 22928405 (-) True AMCG00006855
AMCG00006847 mRNA downstream 301668 22626401 ~ 22651517 (-) True AMCG00006847
AMCG00006846 mRNA downstream 345802 22592099 ~ 22607383 (-) True AMCG00006846
AMCG00006848 mRNA downstream 363447 22587660 ~ 22589738 (-) True AMCG00006848
AMCG00006845 mRNA downstream 409782 22534401 ~ 22543403 (-) True AMCG00006845
AMCG00006862 mRNA upstream 332179 23287256 ~ 23302174 (-) True AMCG00006862
AMCG00006864 mRNA upstream 420290 23375367 ~ 23376805 (-) True AMCG00006864
AMCG00006866 mRNA upstream 613807 23568884 ~ 23571133 (-) True AMCG00006866
AMCG00006873 mRNA upstream 675962 23631039 ~ 23752269 (-) True AMCG00006873
AMCG00006876 mRNA upstream 894568 23849645 ~ 23868247 (-) True AMCG00006876
TU140946 other downstream 2003349 20854057 ~ 20949836 (-) False AMCG00006813
TU140776 other downstream 2716979 20235856 ~ 20236206 (-) True G112420
TU140642 other downstream 3317260 19633237 ~ 19635925 (-) False AMCG00006774
TU140430 other downstream 4611975 18339270 ~ 18341210 (-) False AMCG00006754
TU140351 other downstream 5319740 17632891 ~ 17633445 (-) True G112059
TU141596 other upstream 449098 23404175 ~ 23407207 (-) True G113050
TU142176 other upstream 3544938 26500015 ~ 26500681 (-) True G113530
TU142323 other upstream 4447523 27402600 ~ 27527348 (-) True G113645
TU142485 other upstream 5312185 28267262 ~ 28292598 (-) False G113775
TU142484 other upstream 5336378 28291455 ~ 28292598 (-) True G113775

Expression Profile