RNA id: AMCG00006858


Basic Information

Item Value
RNA id AMCG00006858
length 1728
RNA type mRNA
GC content 0.48
exon number 10
gene id AMCG00006858
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 23354606 ~ 23369102 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCTTACGCCAGGATTATCCACTATGCCACCAGCATCCTGTGCTGCAACAAGGGCTCCATGGACTACCTGCAACTGCACAGGAAAGTTTTCCAGCGTTTTGACATTTCGGAAGacgatttctggtacatagtgAGGAAATGTAGCCGGTTTTCGGTGGTGAGGAGCAGCAGCGACAAGAGCTCGGAGGACTGGCTCAGTTCCGAGTGCACCATCATCGCCAAAACATCCCTGCGCCTGTGCAAGAACTACACCAAACAGGAGTGCAGCCATTGCCAAGAGCTGCACTTGTGTAAATATTTCGTGTATGGCAACTGCAGATATGGCAAAGGAAGgaaAGAATGTAAATACTCTCATGATCTGAGATCAGATCACAACTATCCCATTCTGAGAGAATGCACCCTGCATGAACTAAATGAAGAAGAcctatttctgcttctgctgcAAAATGATCCATCTCTGCTCCCTGAGgtCTGCGCACATTACAATAAGGGGACTGGCTTATACGGAGCTTGTACATTCAAAACCAACTGCACAAAGCTTCACATCTGTCAGCACTTTGTCCAAGACAACTGTATGTTTGGCCACAAATGCAAGAGGTCCCACATGATTGATGAGCATGGTCGGAGAATGCTTGAAGAAAGAGGACTCAGTGGAGACATCATTCACGAACTGCCCTTTATATACAGGAACGTCTATAAATTAAATGCCCAAGGAATCGCAGACTGTGTAGCAGGGCCGTCCGTACAAGAGGAGGAGAAAAGTGAAATCTGTCTCCATTACATACGCAGGAACTGTATGTTTCAAGAACAGTGCATTCGTGTCCACTTCCATCTGCCCTACAAATGGGAAGTGTTTGATGGGACCTCCTGGAAGGAATTGCGGCACATGGAAGAGATTGAGAGGGCTTACTGTGAccccagaaacacacacagtaacGGGTCCCGGCCAATTGACTTCTTGTCAATGTCGAGGGAGTCCTCTTCAGTCAGACGCCTCTCCACAGCCTCCTCGGTCACCAAACCACCGCACTACATCCTCACGACAGAGTGGGTCTGGTACTATAAGGGCGACCATGAAAACTGGATTGAGTATGGAAAACCTGATGACAAACAAAGAGTCGCTTCCATCACTTcgaaggagctggagctggcattcCTTGCGGACAGTTCTGCAGAACTGACAGTTCTTAAAGGTCATCGGAAGTATATCCTCAGCTTTAGagACATGTATCAACGGAATCCTAAACACAACACCAAAAGGAGGGTGCGAAGAAGGCCTAGATTTGTTTCTGTCCAAGATGTGGAGAATAAAATTGCACGGCAAAAGCAACAGATGAAGAAGAGGAACGGAAAAGATGTAAAGGAGAAATTGCTATTTCATGGAACACAGAAGAGCAACGTAGAAGCCATCTGCAACCAGAACTTCGACTGGAGGATCTGTGGGATACATGGGACCGCCTATGGGAAAGGCACCTACTTTGCCACGGATGCCTCCTACTCCCACACTTACTCTGCCTCCGAGTCGGACAGGCGGCTCATGTTCGTGGCTCGAGTGCTGGTGGGGGAGATCACCGGAGGGAAAGCCAGCTACCTGCGCCCGCCTTCCAAAGACGATGGCAAGACCTTTTACGACAGCTGTGTGAACAACGTATCCCACCCCACGGTCTTTGTTGTCTTTGAGAAGCACCAGATCTACCCTGAATATATCATAGAGTACAGTAAGTAG

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141482 lncRNA upstream 396001 22957248 ~ 22958605 (+) True G112955
TU141481 lncRNA upstream 398406 22953180 ~ 22956200 (+) True G112954
TU141465 lncRNA upstream 473250 22877389 ~ 22881356 (+) True G112940
TU141460 lncRNA upstream 490098 22863985 ~ 22864508 (+) True G112938
TU141360 lncRNA upstream 671419 22682960 ~ 22683187 (+) True G112868
TU141602 lncRNA downstream 140047 23509149 ~ 23554741 (+) False AMCG00006865
TU141628 lncRNA downstream 211413 23580515 ~ 23597219 (+) True G113075
TU141629 lncRNA downstream 211413 23580515 ~ 23597219 (+) False G113075
TU141646 lncRNA downstream 352280 23721382 ~ 23721632 (+) True G113090
TU141731 lncRNA downstream 707651 24076753 ~ 24288917 (+) False G113159
AMCG00006859 mRNA upstream 11039 23335086 ~ 23343567 (+) True AMCG00006859
AMCG00006860 mRNA upstream 33833 23303455 ~ 23320773 (+) True AMCG00006860
AMCG00006861 mRNA upstream 65270 23284738 ~ 23289336 (+) True AMCG00006861
AMCG00006857 mRNA upstream 71884 23207193 ~ 23282722 (+) True AMCG00006857
AMCG00006856 mRNA upstream 197171 23149006 ~ 23157435 (+) True AMCG00006856
AMCG00006863 mRNA downstream 27767 23396869 ~ 23402875 (+) True AMCG00006863
AMCG00006867 mRNA downstream 121908 23491010 ~ 23492095 (+) True AMCG00006867
AMCG00006865 mRNA downstream 155740 23524842 ~ 23553299 (+) True AMCG00006865
AMCG00006872 mRNA downstream 205205 23574307 ~ 23580774 (+) True AMCG00006872
AMCG00006870 mRNA downstream 211793 23580895 ~ 23594391 (+) True AMCG00006870
TU141018 other upstream 2151405 21142865 ~ 21203201 (+) True G112600
TU140974 other upstream 2305568 21048336 ~ 21049038 (+) True G112567
TU140941 other upstream 2416436 20937497 ~ 20938170 (+) False AMCG00006811
TU139270 other upstream 10311158 13011184 ~ 13043448 (+) True G111197
TU138516 other upstream 13787255 9566213 ~ 9567351 (+) False AMCG00006565
TU141703 other downstream 663011 24032113 ~ 24036112 (+) False AMCG00006878
TU141783 other downstream 935677 24304779 ~ 24335916 (+) False AMCG00006884
TU141848 other downstream 1139901 24509003 ~ 24587119 (+) False AMCG00006893
TU141973 other downstream 2248965 25618067 ~ 25618445 (+) True G113369
TU142014 other downstream 2445953 25815055 ~ 25832942 (+) True G113400

Expression Profile