RNA id: AMCG00006860


Basic Information

Item Value
RNA id AMCG00006860
length 3602
RNA type mRNA
GC content 0.43
exon number 12
gene id AMCG00006860
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 23303455 ~ 23320773 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCTGCTGCCGCTGTGTCCAACTACGCGACCAAGGTCCTGTGCAGTAACCGGGGCTGTCTGGAGTACCGGCAGCTGCAGCGCAGGCTCAGCCCGGCTCTGGCCGTGTCGGATGCGCGGCTGTGCGAGGTGCTGCGGGACGGCGGCCGGTTCGTGGTCGTGCCCGGCGCGCAGGACAGGATCCCGGGCTGCCCGCTGAGCCCCGACAGCACCATCCTCGCCAAGACCTCAGTGCGGCTGTGTAAGAGCTACCCCAACTGCGGCCGCTGCGAAAACCTGCACCTGTGTAGGAACACATGCCGAAACTCGCACGACTTTCGCTCAGACCACAACTTGGCCATTTTGACAAGCAATCAGCTACAGGACCTGGAAGAAGCCGAACTGttccagctgctgctgcagaatGACTCTTACCTTCTGCCTGAGATCTGCCCCCATTATAACAAGGGCAATGGACAATATGGGTCCTGTACCTTCAAAATGAAGTGCACCAACCTGCACGTCTGCCAGCACTTCTTGCAAGGGGACTGCAAGTTTGGCGCTGGTTGCAAGAGGTGCCACAGATTTGACCTGAACGCTCGTAATATTCTGTCCGGCAGAGGCCTCAGTGCAGACAACACCTGCATCCTGCATGACATTTATAAGAACAGGTACAGGATTGACACCTGTGTTGAGAAAACGGAAGGAAAGACACAGCGTTCGAGGGAACCGTCTTTAAGCTCCACTACCGATGTGGACAGTAATGAAATCTGCCTGTTTTTCCTCCGTAAACACTGCAGTTTCAAAGAGAAGTGCATCCGTGTTCATTTCCATCTGCCATACAAGTGGGAGGTCTTAGACAGAGATGGGTTGACCTGGAAAGAACTTCCCCAAATGGAAGATATTGAAAAGGCCTACTGTAACCCAGAAAACACAACAAGTAATGGATCCCCAGCAGTGAATTTCCTCACCATGACCTGCAGATCAGCTCAAGTCAGGCGCCTCTCCACTGCCTCCTCCGTCACCAAACCTCCACATTTCCTCTTCACAACAGAGTGGGTCTGGTACTGGAAGAACGAGCATGGGAAGTGGACTGAGTATGGGCACCAACAGGATGAGAAGGCTGGTGGCTCCATCTCATCTAAAGTCTTGGAGAATGTATATTTAGCAGATTCCGAAAACAATGTTCCCTTCAGCATCGGAGGTCAGCAGTACATTCTCCACTTTAAAGGCATGTATCAGCAAAACcagatatataaaacaaaaagagaggTACAAAGGAGGCCAAGATTTGTTTCTGCACAAGATGTGGAGAGGAAGCTAAAGAGtGGCCCAACAGAGACTACAGCCTCCACTGCGGTTTCTGTCCCAGCTCACTGGGACCAAGGGGCTCTGCCCGACTTCACATACaagCTCATTTCACTGTCAACCTCCTCTGAGGAATTCCGACAGGTAGAAATCCTGTTCAGACGGACTATGCTTACAAATAAAATCCACAAGATTCAAAGGATCCAAAATCCCTCTCTCTGGAAAGTGTTTCAGTGgCAAAAAGAACAAATGAAGAAGAGAAACGGAGGGAAGGCTGTGGATGAGCGCTTTCTGTTTCACGGCACAGAACAGTCCCTTATTAGTGCCATTTGTGAGCAGAACTTCGACTGGAGGATCTGTGGCATCCACGGGACACTTTATGGGAAAGGAAGTTACTTTGCCAGAGATGCGTCGTATTCCCACAACTATTCCAAGCCCCAAACCAACAGCAGGATTATGTTTGTGGCCCGGGTCCTGGTTGGGGACTTCATTCAAGGAAACAACAGCTACCTACGCCCTCCTGTCAAGGAAGGCAATGCTGTGTTTTATGACAGCTGTGTCAATTCCATGTCCAATCCTTCTATTTTCGTGATCTTTGAGAAGCACCAGGTCTATCCAGAGTACCTTGTCGAGTACAGTTAAGAGTTCACCACAACCCTAGAATTTCGCAAAGTGGTCACCTCTGCTCGCATCATCTAACCATAGAACATGGTTTCTTGGTCTTTGTCAGAAGTGGCTTCTTAGTTTCACATATGTTTATGCTTTAAAGGTTGATGGTTGTCTCCTTTTCCTGATGCTTGCTAGATTTCATATTCTAATGATCCTTATGAATTTCTTCAGTAGACATATAGAGTAATCAACTGTGGagcaacttttaaaaagattgtttttattgttcatcAAACATAAAATTGCTTTATTCCattatatataactttattCCTTTATACCATTATTCCAGTTGAAGTAAAGCTTATGCACAAAGGAACTCACTATGAAAGGCAGAAACAACCTAATAGTTTTCAATGTTGTCTGATTATTGGGAGATATCGAAAAGAccaataacaaaatgtatacatatttcctTGCACAGGCCAATCTCAAAAGAACATGAGTCATTCTGTATGTTACCACCTGTAGGAAATGTCCTCTATTCTGAATAATGTTCTGTACAAATCCAGTGAACActaagaaagaagaaaaaaaaaaagaaatgctccAGAGCGCATTGTTTACCGCTACAACCCTGAACAAAATTGCatctttttcaatttcaaaaatgcaagggggggaaaaaagtttttgaggAAGTAATACAATTTACTGAGATAAGAAAGAGGGAGGACTGAGGCATTTTGTACTTTTCAGCACCAAAAGGTGGTGGTTTGtggtttttaaataacttttttacaCGGCTAGGCAAACACTTCTGAGCATATATTACACCTTTAGGCCCGTTCGCTTTATTTGCAAAACTACTTTTTTTGATTAACTTTATCAAACAAAGTCTATACCTGACATTCTCAGCTTGGACAAATGAAACTGAAtctcaaattaactttttattggTTTTAAGTATGTATACAGGTAGTTACACTTCCAAATAAAGAGAACTATTATGATCACTTGGTCCAATGCTTCAGTAGAGAAAAGTTTAGGTAATTGtacttaatacaaaaatgctttttacTCTTTGACTGTAGTCTGTAAATAAGTGAATACTTTGTCTTTGGTTTCACTTAAATCCTGCTGTGGTACCACCCCAAATGgtactgtcaatgtaacttttttcatggtaccagagcagggtCGTCTTCTCTGTTTTGATTATTGCATCATTTTCAATTACTATCCTTGATTGTTTTAAGATATTAAAGTCAATAAACTATTATGAATGACACTAATGAAAGAGGTTATAGTATTCTCAAAATTACAGTGTTATTCTTCCCCATATGTTTCTACAGCTGATTAAGTACTGTAGTGTGTTTCGTTTCCTTTGCATAATGAGTATCTCACACCATCAAGACATCTTCTCTGATGCACGGTTTCTGCAGTGCAGTATACTGTGGGCTTTCTCCCTTATAGAGAACACCTATAAGTTGTGTCATTTGTCACATGTATCTATCAattccatatttaattattcatattattcaccAATTGTATGCATGATGCTTTTCACTATGAAGGGAGGAGAGGGCTTCTTCATAGAGCTTGATGTCAGTGATATTAAACAGTTCATATTCCCAAATACATGAGAAGTGTTACAGTTCAcacaattatttgcatttttaaaaatattgactGTGGTTTGG

Function

GO: NA

KEGG:

id description
K15259 PARP7S; poly [ADP-ribose] polymerase 7/11/12/13

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141482 lncRNA upstream 344850 22957248 ~ 22958605 (+) True G112955
TU141481 lncRNA upstream 347255 22953180 ~ 22956200 (+) True G112954
TU141465 lncRNA upstream 422099 22877389 ~ 22881356 (+) True G112940
TU141460 lncRNA upstream 438947 22863985 ~ 22864508 (+) True G112938
TU141360 lncRNA upstream 620268 22682960 ~ 22683187 (+) True G112868
TU141602 lncRNA downstream 188376 23509149 ~ 23554741 (+) False AMCG00006865
TU141628 lncRNA downstream 259742 23580515 ~ 23597219 (+) True G113075
TU141629 lncRNA downstream 259742 23580515 ~ 23597219 (+) False G113075
TU141646 lncRNA downstream 400609 23721382 ~ 23721632 (+) True G113090
TU141731 lncRNA downstream 755980 24076753 ~ 24288917 (+) False G113159
AMCG00006861 mRNA upstream 14119 23284738 ~ 23289336 (+) True AMCG00006861
AMCG00006857 mRNA upstream 20733 23207193 ~ 23282722 (+) True AMCG00006857
AMCG00006856 mRNA upstream 146020 23149006 ~ 23157435 (+) True AMCG00006856
AMCG00006852 mRNA upstream 441418 22826983 ~ 22862037 (+) True AMCG00006852
AMCG00006853 mRNA upstream 486092 22809303 ~ 22817363 (+) True AMCG00006853
AMCG00006859 mRNA downstream 14313 23335086 ~ 23343567 (+) True AMCG00006859
AMCG00006858 mRNA downstream 33833 23354606 ~ 23369102 (+) True AMCG00006858
AMCG00006863 mRNA downstream 76096 23396869 ~ 23402875 (+) True AMCG00006863
AMCG00006867 mRNA downstream 170237 23491010 ~ 23492095 (+) True AMCG00006867
AMCG00006865 mRNA downstream 204069 23524842 ~ 23553299 (+) True AMCG00006865
TU141018 other upstream 2100254 21142865 ~ 21203201 (+) True G112600
TU140974 other upstream 2254417 21048336 ~ 21049038 (+) True G112567
TU140941 other upstream 2365285 20937497 ~ 20938170 (+) False AMCG00006811
TU139270 other upstream 10260007 13011184 ~ 13043448 (+) True G111197
TU138516 other upstream 13736104 9566213 ~ 9567351 (+) False AMCG00006565
TU141703 other downstream 711340 24032113 ~ 24036112 (+) False AMCG00006878
TU141783 other downstream 984006 24304779 ~ 24335916 (+) False AMCG00006884
TU141848 other downstream 1188230 24509003 ~ 24587119 (+) False AMCG00006893
TU141973 other downstream 2297294 25618067 ~ 25618445 (+) True G113369
TU142014 other downstream 2494282 25815055 ~ 25832942 (+) True G113400

Expression Profile