RNA id: AMCG00006861



Basic Information


Item Value
RNA id AMCG00006861
length 327
RNA type mRNA
GC content 0.58
exon number 3
gene id AMCG00006861
representative True

Chromosome Information


Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 23284738 ~ 23289336 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGCCCCCCTATGGCATAAGAGATTTCATCTCACAGTACAGTGGACAGGGTGGCAAAGGCCTTGGAGTTCTTGAGGGAGCCGGACAGTTCGTGGAGGAAGGAGACGATGTGGGAGTCTTTCTCGGATTTCTTGGCATCGAAGATGACGATGAGGGTGAAGTGGGGTTCAGGCCGCGTCAGAAATGCACCACCTTGTCCAGCGTGTTCAGGTCGGACGCCCGGTCACTCATGATCATGATGACGTTGGGCCAGTGCGTCACAGGCCGGTCGCTGGGCAGAGACACCACGGCCGGGTACTGGTCCACTCCCTTGGGGGCCTCCCTGTAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU141482 lncRNA upstream 326133 22957248 ~ 22958605 (+) True G112955
TU141481 lncRNA upstream 328538 22953180 ~ 22956200 (+) True G112954
TU141465 lncRNA upstream 403382 22877389 ~ 22881356 (+) True G112940
TU141460 lncRNA upstream 420230 22863985 ~ 22864508 (+) True G112938
TU141360 lncRNA upstream 601551 22682960 ~ 22683187 (+) True G112868
TU141602 lncRNA downstream 219813 23509149 ~ 23554741 (+) False AMCG00006865
TU141628 lncRNA downstream 291179 23580515 ~ 23597219 (+) True G113075
TU141629 lncRNA downstream 291179 23580515 ~ 23597219 (+) False G113075
TU141646 lncRNA downstream 432046 23721382 ~ 23721632 (+) True G113090
TU141731 lncRNA downstream 787417 24076753 ~ 24288917 (+) False G113159
AMCG00006857 mRNA upstream 2016 23207193 ~ 23282722 (+) True AMCG00006857
AMCG00006856 mRNA upstream 127303 23149006 ~ 23157435 (+) True AMCG00006856
AMCG00006852 mRNA upstream 422701 22826983 ~ 22862037 (+) True AMCG00006852
AMCG00006853 mRNA upstream 467375 22809303 ~ 22817363 (+) True AMCG00006853
AMCG00006851 mRNA upstream 479132 22774720 ~ 22805606 (+) True AMCG00006851
AMCG00006860 mRNA downstream 14119 23303455 ~ 23320773 (+) True AMCG00006860
AMCG00006859 mRNA downstream 45750 23335086 ~ 23343567 (+) True AMCG00006859
AMCG00006858 mRNA downstream 65270 23354606 ~ 23369102 (+) True AMCG00006858
AMCG00006863 mRNA downstream 107533 23396869 ~ 23402875 (+) True AMCG00006863
AMCG00006867 mRNA downstream 201674 23491010 ~ 23492095 (+) True AMCG00006867
TU141018 other upstream 2081537 21142865 ~ 21203201 (+) True G112600
TU140974 other upstream 2235700 21048336 ~ 21049038 (+) True G112567
TU140941 other upstream 2346568 20937497 ~ 20938170 (+) False AMCG00006811
TU139270 other upstream 10241290 13011184 ~ 13043448 (+) True G111197
TU138516 other upstream 13717387 9566213 ~ 9567351 (+) False AMCG00006565
TU141703 other downstream 742777 24032113 ~ 24036112 (+) False AMCG00006878
TU141783 other downstream 1015443 24304779 ~ 24335916 (+) False AMCG00006884
TU141848 other downstream 1219667 24509003 ~ 24587119 (+) False AMCG00006893
TU141973 other downstream 2328731 25618067 ~ 25618445 (+) True G113369
TU142014 other downstream 2525719 25815055 ~ 25832942 (+) True G113400

Expression Profile