RNA id: AMCG00006868


Basic Information

Item Value
RNA id AMCG00006868
length 1890
RNA type mRNA
GC content 0.53
exon number 5
gene id AMCG00006868
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 23613000 ~ 23619393 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACATTTTGAGTGCGGTTTTTGAGGTTGTTTGGCCCGCCCCTTTCTGGCAGGTCATACTGTCACAAGTATGGCGGCGCCCATGGCGAAGGGATGGCGATGTTTGGGGAGTTCTAGTCGGTGTTTTAGTCTGAGAAAGAAACCTATATGTACAACCCCCACCCGCAGACTCTCTGGCTCGGCTGGAGGAGGGCTCCTGTCCTCGTTAAGCAAACGCGGGGTTTTGAAGGACGCTTTCCCCGAGCAGGCAGCTCAAACCCAGCTCCCCGAGCTCCTGCAGGCGGGCGGTCAGACGGTTTACTGCGGCTTCGACCCCACGGCCGACAGCCTGCACGCCGGGAACCTGCTGGCGCTCGTCGGCCTGCTGCACTTCCGCGCCGCCGGCCACCACGTCATCGCGCTCATCGGCGGGGCGACGGCGCGGATCGGGGACCCCAGCGGCAAAGCGACGGAGAGGGAGCCCCTGTCCGCGGAGGCCGTGGAGGTCAATGTCGGGGGGATCAGAAGCGGTCTGCAGCGGGTCATCGCTAACCATGAACTGTATTTCTCCGGGGAGCCTCAGACGCTGGGGACCGTGACTGTGCTGGACAACAGCAGCTGGTACCGGGGCTGGGATGTGGTGGCTTTTATGTCCGAGGTGGGCAGACATTTCCGCATGGGCACGATGCTCAGCCGGCAGAGCGTCCAGACGCGGCTGAAGAGCGCCGAGGGCATGAGCCTCACCGAGTTCACCTACCAGCTCTTCCAAGCCTACGATTTCTACCATCTGAACCAGCACCACGGCTGCAGAATCCAGCTTGGTGGGACCGACCAACTGGGCAACTTAATGTCTGGACATAACCTCATTCAAAAaGTAACTGGGGAGGAGGTGTTTGGACTTACTGTTCCCCTAATTACAAGCTCGACAGGAGACAAACTGGGAAAGACCGCAGGCAATGCTGTGTGGCTCAACAGAGACCGAATGTCCCCCTTTGAGTTCTACCAGTTCTTCCTCAGACAACCAGACTCGCACGTGGAAAGGCAGGTGACCACTTGGTACTTGAAGTTGTACACATTCCTCCCATTACCAGAAGTAGGTCACCTCATGGAACAGCACCACCAGGAGCCTGAGAAGCGATCTGCGCAGAAACGCCTGGCTGCTGAAGTCACCAAACTCGTTCATGGCAAAGAAGGCTTAGACAGTGCCAAACGGTGTACCAGTGCCTTGTACCACAGCAGCCTGCGGGCTCTGGAGCAGATGAGTGACGAGGAGCTGCAGGAACTGTTCAGAGAAGCTCCCTTCTGTGAACTCCTACTGGAACCTGGAACCACCGTCCTGGACGCATGCTGCCAAGCCAACGCCATCCCAGAGGGCGCCAGAGGGTACCAGATGGTCACAGACGGAGGGGTGTGGATAAACCACAGCCGAGTCACCACCCCCGAGCAGGTCCTGATTCCCGGGCAGCACATCCTGACAAACGGACTGACGCTCATCCGGATAGGGAAGAGAAACTTTTATATTATCAAGTGGCTAAACCTGTATGGTCAAGAGCAATGAGCAGAAGACttctaatttgttttcctgaacCATAAACCCCCTagcgtttttgtttgtttttttgtcattgttgttgttaggAGTAAATATAAACCAAAATCATATGACCAAGCTTCTCAGACAGCTTCAAGGATTGTGCTCAGAGCCTCTGAATTGGATCTCAtgatctaaatatatattttttggaacagtggtttgttttttcttttatgaggaaaaataaatctgtaaatgtttaaGTATAAATGGGTATtgagtgaaaataataaaattaaaacttttgaTAACATAccttatcatatatatattttttcctcctaTGATGTGCATGTGTTAAAATGGGGGTATTCTAGGA

Function

GO:

id name namespace
GO:0006437 tyrosyl-tRNA aminoacylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004831 tyrosine-tRNA ligase activity molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K01866 YARS, tyrS; tyrosyl-tRNA synthetase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141628 lncRNA upstream 15781 23580515 ~ 23597219 (+) True G113075
TU141629 lncRNA upstream 15781 23580515 ~ 23597219 (+) False G113075
TU141602 lncRNA upstream 58259 23509149 ~ 23554741 (+) False AMCG00006865
TU141482 lncRNA upstream 654395 22957248 ~ 22958605 (+) True G112955
TU141481 lncRNA upstream 656800 22953180 ~ 22956200 (+) True G112954
TU141646 lncRNA downstream 101989 23721382 ~ 23721632 (+) True G113090
TU141731 lncRNA downstream 457360 24076753 ~ 24288917 (+) False G113159
TU141732 lncRNA downstream 457360 24076753 ~ 24288917 (+) True G113159
TU141736 lncRNA downstream 457360 24076753 ~ 24257385 (+) False G113159
TU141805 lncRNA downstream 751325 24370718 ~ 24372835 (+) True G113224
AMCG00006871 mRNA upstream 16347 23596096 ~ 23596653 (+) True AMCG00006871
AMCG00006870 mRNA upstream 18609 23580895 ~ 23594391 (+) True AMCG00006870
AMCG00006872 mRNA upstream 32226 23574307 ~ 23580774 (+) True AMCG00006872
AMCG00006865 mRNA upstream 59701 23524842 ~ 23553299 (+) True AMCG00006865
AMCG00006867 mRNA upstream 120905 23491010 ~ 23492095 (+) True AMCG00006867
AMCG00006869 mRNA downstream 3969 23623362 ~ 23628692 (+) True AMCG00006869
AMCG00006874 mRNA downstream 285371 23904764 ~ 23921123 (+) True AMCG00006874
AMCG00006879 mRNA downstream 398679 24018072 ~ 24022643 (+) True AMCG00006879
AMCG00006878 mRNA downstream 412696 24032089 ~ 24036105 (+) True AMCG00006878
AMCG00006884 mRNA downstream 685303 24304696 ~ 24335880 (+) True AMCG00006884
TU141018 other upstream 2409799 21142865 ~ 21203201 (+) True G112600
TU140974 other upstream 2563962 21048336 ~ 21049038 (+) True G112567
TU140941 other upstream 2674830 20937497 ~ 20938170 (+) False AMCG00006811
TU139270 other upstream 10569552 13011184 ~ 13043448 (+) True G111197
TU138516 other upstream 14045649 9566213 ~ 9567351 (+) False AMCG00006565
TU141703 other downstream 412720 24032113 ~ 24036112 (+) False AMCG00006878
TU141783 other downstream 685386 24304779 ~ 24335916 (+) False AMCG00006884
TU141848 other downstream 889610 24509003 ~ 24587119 (+) False AMCG00006893
TU141973 other downstream 1998674 25618067 ~ 25618445 (+) True G113369
TU142014 other downstream 2195662 25815055 ~ 25832942 (+) True G113400

Expression Profile