RNA id: AMCG00006869


Basic Information

Item Value
RNA id AMCG00006869
length 3556
RNA type mRNA
GC content 0.42
exon number 3
gene id AMCG00006869
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 23623362 ~ 23628692 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

caaaactttttttttttttttgtataggtTCAAGTTAATAATTCACATAATCTAAAAAGGAAAGGTATGGCGaaataatagaaaactaaaatgcacAAATTACTTCTACAAGTGGGAACAATAGCACACTTTTAAAGAATAATGAATACACCAACAACCACTTCCAGACAATGTTTAACTATACAGGCTACGTGTATGTATCCAGCACCACCCATTTTCAATGCATGTTTTTCCCTTCTCAGCTCAgtttacttatgtatttttgttatttccaCTTAAAATCACTACTAGCTGTAATAACTCCGGGGCGATTAATCACAAACACGCCTATATCATCGGTTTGACTGTAACATCTGCACTTTGTTACTTTACTACAGCTCGTTGTTGCAAAATGTAACTAATAATTGTCACTTTCTGGACCGCCAAAGAGGTTTACTTGTACAAAACCGACTTTCGCACGATGACGAATAACACCAACACAGTGCAGAAGTGCTACGATGGGACGTTTGATGGGACGTTTGATGTGACCCTACGGGTCCCGGTTGACACTCAGCGTCGTGGCACCATACGAGCCGCGGGGATGGCGCTCTACCACAGAGTTGCACCTTGTTTACGCTCGCTTTCTACTACTCCGCCCGCCCCGGCCCCTCTCGCCGGGGAGGGACTTGcttatacacaaacacagcactttAGATGAGAGCAAGGTctccgcacacacacacacagccccccagtttaaaaagcaacaaactCCATTAAAGGTGGACTAGTAGTGACGAATCACAACAGCGCAGCCGCGTACGGCAGCTTTACCGACGCAAATACACTCCAAACGCCGTATGCATGCGTGATTCAAGTCCATATAGGCGTTGCTGACAGAGTGTATGCGTATGTATATggattgcatttttatttttaaatatgaatgcatgcatGACTTTTCACTTCCTCCTATCGCAATACTACTGCACGGCGGCGCTGTTATTTACCCCGCAGTAGAGGCGTCGTTGCTGCTAATTGACTTTACGTGGCTACAGCACCGTCTCCTATGCTGGATAATTAGTGCTTAATGTATAGATCTGGAATGCATATTTAAAGGTAGCCGTCCACGGCGTGTGTTTTAAAGGGACTTGCGGTCTCGCTGCTCCGTGGTTGGGGAATAGCAACATTAAGGCGCACCTTAAGAGAAGTGGGCGGCGCCATCGTCTTTAACCAATGGATCTCcttctgtgtttaaatagaTCTCCgtgtcaatcatttttttctcagtcAGCCTCCCTTCAATCGCCATATTGGGTACTGAAAAAggcttgtctgtttttttttttctccccctgctCTTACTACAAGTCAAAATTGACAGGAGTGGCTTTTGCAGCAGCACTTTGTTTTGATGATCGGCGGAGATTGCTTTTGCTCGCCCTGCCACCGTGGCTCTGGTTCTGTAGATCTCGGCTTTGCGCACGGCATGCCTGCGTCTGCGCGGGTTACTGGAGCCGCTCACGCCTGTTTCGGGTCGCTTTGAAGGAGACAGCGATACGTCGTTTTCTGTTgaatttcttttttgtgtgcgtgtgcgtgtgtggggggggggaaagccAGGGAAACAATGTCCAATGTTCGTCTTTCCAATGGGAGTCCGACGCTGGAAAGGATGGACGGCAGGCTGGCGGATCACAAACCCTCGGCGTGCAGGACCCTGTTCGGCCTGCCGGACCGCGAAGAGTTAAAGCGAGAATTAAAGGGACAGTTGAAGGGGATGGAAGAGGCGTCCTGCGCAAGATGGGGTTTCGACTTCGCCAACCACAGGCCCCTGCCCGGCTCGGGGAGGTTCGAGTGGGTGCCCGTGGATGCCAAAGATGTGCCCGACTTCTACAACCGGCCGCCGCGGGCACCCAAGGGGATCTGCGCCTCTGGGAATACCAATTTGGATCTTAATGGGAATCATCAGTGTGGGGGGACACCCTGTCCAGAGGGCAAATTGGGAGACAGATTTTCCGACGAGCAGACGGAGACATCAGAAAGTCAAGTGGACAGCAGAGCACAAAGCACGGCGCAGAGGAAGAGATCCGCCACTCATGAGTCTTCTTCgcaaaataaaagagccaaACCCGCCTCTGAAGATGTAGCACCTACCGCAACTGTGGAACAGACACCCAGGAAATCCAGTCCGAGGAAACAAACagctGAAGATGTTTCCCTTGTTCATCGAATACATGAGTGCTTGATGAAGTAAAGTGGAACTgcgtttaaaagaaaatacatatcgTTAATTCTCCAAACGATGGAGATTACTGTACAAgcactgaaatatatacatgtatgtatatctatgtattaaaacaatatatatacatatatatataaacactaagGTTCTGGCactcaaaaaaaataaaaaaataaagctgcctCAAGCAGTAAATGTAGCAGTGTGCAAttaggtttttctttttgctcatttattttctttttggtttttttttactacctgtgtatataaatattttctcacCATATGTAGCacataaaaaaactttttttattgtttcagatacaaatttcctttaaaaaaaaatgacttgaaGATTTGCAGTGTAGTTTTTCTTAATGTCTCCAAaatgctgtcattttttttaaaggtggtCTGTTATATTCTAATCAGTTATATGTATAATGTCCAAAACCCGCTGACATGAGAGGTTGACATTGATGTGGTTCTCACCAACCCCAGGTAGCATTAGAAACTTTGTggaagtagtttttttttttttttttttctccttgtttttctccatgTGAAGTACTCTAAACCTAATATATAACAgtttctttcaaaaatgtaaatcccAGTTTTCCAGACAAAAGAGTGTGAAACACAGATacagcatgtatttatttatttttgttatttcagaGGTGAGTGAGTGAGCAGAATTTAAGATGATCTGTTCAGAATTGGAAggtcaaattatttaaaatccagCATGCAAAGTGGGTGCCATGCAAACACGGCTTCCACACCAAGTGTCATATTCAGCCTGTGTTTCTGGGCTAAGAAAAAGAGCCTAAATTTCAGAAGCAAAATTATGTTTGAAATCTGTTGCAGAAAACTATGCAGCACGGAAAGCTTgatttaaataagttacaccCAGTAAACCTGGCAACTTAATCAACAGAGAACCATTTGTATGAAGTCAGTTAAccatattattttaagtaaacctgttaccatttaaaaatgtgtaaacatacacaaacaaatacatattttatgtggtAGAGCgcctgattttaaatatataaaatggcaCCGTATTGATCAGAAAAGGCATTTCTTGTCTTTCAAAATTCAGAAACTACATTGCCTGTGTATTTGTAAAGTATAAAACGTTGAAGTGTACCTGTGTACATAACTTTGTAAAAACACTGAGAAATTATACTAACTTATTTAtgttaagatttttttatataatttagaagaaatgtgtttttgtttgttttatggttaTCCAAAGTGGCatttattgtgcatttttaagagcttttttttttt

Function

GO:

id name namespace
GO:0043086 negative regulation of catalytic activity biological_process
GO:0045859 regulation of protein kinase activity biological_process
GO:0042326 negative regulation of phosphorylation biological_process

KEGG:

id description
K06624 CDKN1B, P27, KIP1; cyclin-dependent kinase inhibitor 1B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141628 lncRNA upstream 26143 23580515 ~ 23597219 (+) True G113075
TU141629 lncRNA upstream 26143 23580515 ~ 23597219 (+) False G113075
TU141602 lncRNA upstream 68621 23509149 ~ 23554741 (+) False AMCG00006865
TU141482 lncRNA upstream 664757 22957248 ~ 22958605 (+) True G112955
TU141481 lncRNA upstream 667162 22953180 ~ 22956200 (+) True G112954
TU141646 lncRNA downstream 92690 23721382 ~ 23721632 (+) True G113090
TU141731 lncRNA downstream 448061 24076753 ~ 24288917 (+) False G113159
TU141732 lncRNA downstream 448061 24076753 ~ 24288917 (+) True G113159
TU141736 lncRNA downstream 448061 24076753 ~ 24257385 (+) False G113159
TU141805 lncRNA downstream 742026 24370718 ~ 24372835 (+) True G113224
AMCG00006868 mRNA upstream 3969 23613000 ~ 23619393 (+) True AMCG00006868
AMCG00006871 mRNA upstream 26709 23596096 ~ 23596653 (+) True AMCG00006871
AMCG00006870 mRNA upstream 28971 23580895 ~ 23594391 (+) True AMCG00006870
AMCG00006872 mRNA upstream 42588 23574307 ~ 23580774 (+) True AMCG00006872
AMCG00006865 mRNA upstream 70063 23524842 ~ 23553299 (+) True AMCG00006865
AMCG00006874 mRNA downstream 276072 23904764 ~ 23921123 (+) True AMCG00006874
AMCG00006879 mRNA downstream 389380 24018072 ~ 24022643 (+) True AMCG00006879
AMCG00006878 mRNA downstream 403397 24032089 ~ 24036105 (+) True AMCG00006878
AMCG00006884 mRNA downstream 676004 24304696 ~ 24335880 (+) True AMCG00006884
AMCG00006885 mRNA downstream 709216 24337908 ~ 24347363 (+) True AMCG00006885
TU141018 other upstream 2420161 21142865 ~ 21203201 (+) True G112600
TU140974 other upstream 2574324 21048336 ~ 21049038 (+) True G112567
TU140941 other upstream 2685192 20937497 ~ 20938170 (+) False AMCG00006811
TU139270 other upstream 10579914 13011184 ~ 13043448 (+) True G111197
TU138516 other upstream 14056011 9566213 ~ 9567351 (+) False AMCG00006565
TU141703 other downstream 403421 24032113 ~ 24036112 (+) False AMCG00006878
TU141783 other downstream 676087 24304779 ~ 24335916 (+) False AMCG00006884
TU141848 other downstream 880311 24509003 ~ 24587119 (+) False AMCG00006893
TU141973 other downstream 1989375 25618067 ~ 25618445 (+) True G113369
TU142014 other downstream 2186363 25815055 ~ 25832942 (+) True G113400

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00047323 False 1921 mRNA 0.41 3 NC_007136.7 2282265 ~ 2287189 (+)