RNA id: AMCG00006870


Basic Information

Item Value
RNA id AMCG00006870
length 2227
RNA type mRNA
GC content 0.51
exon number 11
gene id AMCG00006870
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 23580895 ~ 23594391 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCAGGGTACCCCATAAAGATCTACTTCATGTGCTCCACGGAGGTCTGCTCCCCATCAGCCAAGCCGTGTGTGGAAGGATGCTTTGATGGGCGCAAGCTCCCATTGGTTGAGGACCCCAATGCTGATGAGCGCTGTACCAGGAAGCCTTGCCCAGGAAAGGCCAAGAGATCTGCAGGCCTCAGCCCAGTGATTGGCTTgctggtcataatgttgtggTGTGAAGGACGGAGAGTGTGGTTTCTGCTGGCAACGTGGCTGTTCTGTGGTTTGTCAAATGCTCAGCTAGAGAATGAAGATCCATTTGAAACTGAGGATGACTTGCATGGCAGGGTGAAGAGAGTCCATGAACCTGATGAGGATGGGTTCCTCTGGGATGACTACACTTCTCTGGATCTTCACAGGTCTAATGGAGATGCTGATAAAATGGGTCACTTTCCTCCACAAACTGGTGTTGATGAAGGTAACATGGCTTGGAATGACTTGGAGCAAGAGCATGAGGAAGCATGGAAGTCTCCACAAGATCCTGTAGACGCTTCTAACTAGGATAACGTGATGACCAATAACCTTGACCCAAATGCCTTCTACTTCAATGAGGATCGTGACCGCTCTAATCCTATAAAAGTGGTCAGTGTTCACCATGCTGATGGTTACTGGGGTGAAGACTCTGACCTCCAGGTGGGTCTGAAGGCTGTGGGACAAGATGATTTGGAGCTGTCTGAATCTGAGGCTGTAGATTCAGATTGGCTTGATGCATCCCCTTTACCAAGGGATGGTGTGCAGAGCCTTCCACTGATCAGGGACCCTGAGGCTGTTGCTCCTGGTGTTGCAGTTTCTCTCAATGATAATGAGATGAATGATGCCACCTTGGAGGGTGAGGAGACTGGCTCTGacctgcatttaaatgaggCTAATGGGCAAGGTGATGAGGCCAATGCTGGTGTCCTCCCAGATGCTGACGGTTCAGACTCTGAGCCTGAGGGAGAGGACATGACCCAAGTTCCTGAGCCAAGTGTTGCTTGTGGGAACCGCAGCATGTTGATCCAGTTCTCCTTGCAGCGTTACTCTCGGATCTTTCTGCAGAAAGGTTATGGTTGACATTCTGTGCCCGAgatcaaatatttacatgagCCAGAGCTGCAGAAGGTGTGAGCTAAGGGGGTACGCGAGACCTTGAAGCCTCTTGCTGTCCTAGCGTAATTCTATTGTGTACCCCATTGCAGCCAGAAGCAGACCCCTCCCAGTTCTGAAGCTCCCCAGGTCCTGTAAGCACACAGTGAGGCGGTGTAACAGCAGCCTGGTGCTGATTGCATCCTTCAAGGGCTgctatgtatttaatttgGTATCCATCATTGGGTAACTGCTTTCCCTCAATCTTATGGAGTCCAATATGCATGAGTAGTGACTTAAAAGCCATGCAATATCTTTGAAGTCCCTGGTCACCCTTAAGGTCTTGCCATGAACACCAAGATCCCATTTGACCCAGTACTGGCCCTGTTGGCTTCTAATCTCTGTCCTTGAACAGAGGAAGCACCATGAACTCCATGAAGCGCTGACCCTGCAGTACTATGACCTGGTCTTGAAGAAGCAATTTGTGGCCACAGTATCTTGCCCAGTGACCACTACTCCAACGCCTGAACCTCCCAAAGGCCTGTCCATCTCCTGCAGTGATGTGTGCATGATGGGTGGTCCCCTGTCGGCTGTGGAAATCCTAGACTCCTCCAAAACTTTGGTCCCTGTGCTCCAGACCCCCAAGTTGTGTGGCTATGCCTTGGTGAAGAAGGATGGCAAGAACATCCTGACCATCCCGTACACTGCCTGTGATGTGAAGCATGTGGAGAAGAGGTACATTATTCAGGTGGCTTATGTGACTAGTGGTGGACAGCGAGCAGAGATCCAGGTATCATGCCCCTATAAACCACTTGTGCCAAAGCAAGGATGCCAGATCCCTAAGATACAGCAGGTATCTTGTGGTCCCAAGAGAATAGGCTCCAAAGCCTGCCTTTCCAAGGGTTGCTGTGTAGACTCGGACACTGCCCACTGCTACTATCCTCTGGAAGaatgcactgcggACAGGCACTTTGTCTTTGTGGTCCATCGCACCTTCTCTGTGGACCCTGCCTCCTTGGTGGTTACTGGCAACAACTCCTGCACCCCGGTCATCTGCACAACAAACTTTGCAGTCTTCAAGTTCCCTGTGACTGGCTGTGGAACCCATGCATTTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141602 lncRNA upstream 26154 23509149 ~ 23554741 (+) False AMCG00006865
TU141482 lncRNA upstream 622290 22957248 ~ 22958605 (+) True G112955
TU141481 lncRNA upstream 624695 22953180 ~ 22956200 (+) True G112954
TU141465 lncRNA upstream 699539 22877389 ~ 22881356 (+) True G112940
TU141460 lncRNA upstream 716387 22863985 ~ 22864508 (+) True G112938
TU141646 lncRNA downstream 126991 23721382 ~ 23721632 (+) True G113090
TU141731 lncRNA downstream 482362 24076753 ~ 24288917 (+) False G113159
TU141732 lncRNA downstream 482362 24076753 ~ 24288917 (+) True G113159
TU141736 lncRNA downstream 482362 24076753 ~ 24257385 (+) False G113159
TU141805 lncRNA downstream 776327 24370718 ~ 24372835 (+) True G113224
AMCG00006872 mRNA upstream 121 23574307 ~ 23580774 (+) True AMCG00006872
AMCG00006865 mRNA upstream 27596 23524842 ~ 23553299 (+) True AMCG00006865
AMCG00006867 mRNA upstream 88800 23491010 ~ 23492095 (+) True AMCG00006867
AMCG00006863 mRNA upstream 178020 23396869 ~ 23402875 (+) True AMCG00006863
AMCG00006858 mRNA upstream 211793 23354606 ~ 23369102 (+) True AMCG00006858
AMCG00006871 mRNA downstream 1705 23596096 ~ 23596653 (+) True AMCG00006871
AMCG00006868 mRNA downstream 18609 23613000 ~ 23619393 (+) True AMCG00006868
AMCG00006869 mRNA downstream 28971 23623362 ~ 23628692 (+) True AMCG00006869
AMCG00006874 mRNA downstream 310373 23904764 ~ 23921123 (+) True AMCG00006874
AMCG00006879 mRNA downstream 423681 24018072 ~ 24022643 (+) True AMCG00006879
TU141018 other upstream 2377694 21142865 ~ 21203201 (+) True G112600
TU140974 other upstream 2531857 21048336 ~ 21049038 (+) True G112567
TU140941 other upstream 2642725 20937497 ~ 20938170 (+) False AMCG00006811
TU139270 other upstream 10537447 13011184 ~ 13043448 (+) True G111197
TU138516 other upstream 14013544 9566213 ~ 9567351 (+) False AMCG00006565
TU141703 other downstream 437722 24032113 ~ 24036112 (+) False AMCG00006878
TU141783 other downstream 710388 24304779 ~ 24335916 (+) False AMCG00006884
TU141848 other downstream 914612 24509003 ~ 24587119 (+) False AMCG00006893
TU141973 other downstream 2023676 25618067 ~ 25618445 (+) True G113369
TU142014 other downstream 2220664 25815055 ~ 25832942 (+) True G113400

Expression Profile