RNA id: AMCG00006871


Basic Information

Item Value
RNA id AMCG00006871
length 249
RNA type mRNA
GC content 0.55
exon number 2
gene id AMCG00006871
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 23596096 ~ 23596653 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGATGGCATCTTTATTCCCCAGCTGCCCCAACCCTCTGGACTACGGTCACACCTCCACCCTGCACGTCCACAACAAGCAGCCTTTGCCCAAACAGCACCGTCGATTTGAGATCCGCACCTTCCAGTTCATGGACCACGTGACTCACCACTACCTGCATGAGGAGATCTACTTCATGTGCTCCACGGAGGTCTGCTCCCCATCAGCCAAGCAGTGTGTGGAAGGATGCTTTGATGGGCGCAGTAAGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141602 lncRNA upstream 41355 23509149 ~ 23554741 (+) False AMCG00006865
TU141482 lncRNA upstream 637491 22957248 ~ 22958605 (+) True G112955
TU141481 lncRNA upstream 639896 22953180 ~ 22956200 (+) True G112954
TU141465 lncRNA upstream 714740 22877389 ~ 22881356 (+) True G112940
TU141460 lncRNA upstream 731588 22863985 ~ 22864508 (+) True G112938
TU141646 lncRNA downstream 124729 23721382 ~ 23721632 (+) True G113090
TU141731 lncRNA downstream 480100 24076753 ~ 24288917 (+) False G113159
TU141732 lncRNA downstream 480100 24076753 ~ 24288917 (+) True G113159
TU141736 lncRNA downstream 480100 24076753 ~ 24257385 (+) False G113159
TU141805 lncRNA downstream 774065 24370718 ~ 24372835 (+) True G113224
AMCG00006870 mRNA upstream 1705 23580895 ~ 23594391 (+) True AMCG00006870
AMCG00006872 mRNA upstream 15322 23574307 ~ 23580774 (+) True AMCG00006872
AMCG00006865 mRNA upstream 42797 23524842 ~ 23553299 (+) True AMCG00006865
AMCG00006867 mRNA upstream 104001 23491010 ~ 23492095 (+) True AMCG00006867
AMCG00006863 mRNA upstream 193221 23396869 ~ 23402875 (+) True AMCG00006863
AMCG00006868 mRNA downstream 16347 23613000 ~ 23619393 (+) True AMCG00006868
AMCG00006869 mRNA downstream 26709 23623362 ~ 23628692 (+) True AMCG00006869
AMCG00006874 mRNA downstream 308111 23904764 ~ 23921123 (+) True AMCG00006874
AMCG00006879 mRNA downstream 421419 24018072 ~ 24022643 (+) True AMCG00006879
AMCG00006878 mRNA downstream 435436 24032089 ~ 24036105 (+) True AMCG00006878
TU141018 other upstream 2392895 21142865 ~ 21203201 (+) True G112600
TU140974 other upstream 2547058 21048336 ~ 21049038 (+) True G112567
TU140941 other upstream 2657926 20937497 ~ 20938170 (+) False AMCG00006811
TU139270 other upstream 10552648 13011184 ~ 13043448 (+) True G111197
TU138516 other upstream 14028745 9566213 ~ 9567351 (+) False AMCG00006565
TU141703 other downstream 435460 24032113 ~ 24036112 (+) False AMCG00006878
TU141783 other downstream 708126 24304779 ~ 24335916 (+) False AMCG00006884
TU141848 other downstream 912350 24509003 ~ 24587119 (+) False AMCG00006893
TU141973 other downstream 2021414 25618067 ~ 25618445 (+) True G113369
TU142014 other downstream 2218402 25815055 ~ 25832942 (+) True G113400

Expression Profile