RNA id: AMCG00006873


Basic Information

Item Value
RNA id AMCG00006873
length 633
RNA type mRNA
GC content 0.46
exon number 11
gene id AMCG00006873
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 23631039 ~ 23752269 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGGCGAGttgagTCACCATTTCATCGCACGATATGGGTGGAGATAGATTATTATATTGTCCTTGGAAGTTTACAAAGCAGGTTGACAGAAGCACATCGCGCCGCAGTCAAAGTCATCCGAAGAATGCAGTATTTTGTTGCCAGGCGGAAATTTCAGCAAGCCAGGAAGCCATATGATGTACGAGACGTGATTGAGCAATACTCTCAGGGACACCTCAACATGATGGTACGGATAAAAGAACTGCAAAGAAGATTGGACCACTCTTTGGGGAAACCAGGGATGTTTCTTTCAGAAAAGGGCCTAGATAAAGGATACTACACAGTTGGAGCCAGACTGATCCGTTTAGAGGATAAGGTCACACAGATGGACCAGAAAGTAGAGGACATCTTAAAGATCTTGGTGGACCAGTTTAAACCACAGCCAGAGCTTCTGCAGAAGGCAGCACCAaATTTGTGTCCAGACGCTCAGGGgcCGAGATCATCACCTTTGTTGTCTAACCACATTGCTGGCTCTGGCTATGGGAGAACGTTTCTTCTCATGGACATCCCTCCTGATGAAAACAGGATCGTTATGAGTGTCCACCGCTGTTTAGGGATACAGAATAAACAGATATCCAAGCGTGTCTATTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141622 lncRNA downstream 61765 23568155 ~ 23569274 (-) False AMCG00006866
TU141619 lncRNA downstream 76300 23547797 ~ 23554739 (-) True G113066
TU141551 lncRNA downstream 307888 23322933 ~ 23323151 (-) True G113014
TU141550 lncRNA downstream 309268 23321077 ~ 23321771 (-) True G113013
TU141507 lncRNA downstream 476136 23153868 ~ 23154903 (-) True G112979
TU141786 lncRNA upstream 563463 24315732 ~ 24321862 (-) True G113209
TU141789 lncRNA upstream 578818 24331087 ~ 24335914 (-) True G113212
TU141806 lncRNA upstream 621423 24373692 ~ 24375929 (-) True G113225
TU141891 lncRNA upstream 919519 24671788 ~ 24673498 (-) True G113301
TU141978 lncRNA upstream 1639527 25391796 ~ 25392318 (-) True G113374
AMCG00006866 mRNA downstream 59906 23568884 ~ 23571133 (-) True AMCG00006866
AMCG00006864 mRNA downstream 254234 23375367 ~ 23376805 (-) True AMCG00006864
AMCG00006862 mRNA downstream 328865 23287256 ~ 23302174 (-) True AMCG00006862
AMCG00006854 mRNA downstream 672733 22953176 ~ 22958306 (-) True AMCG00006854
AMCG00006855 mRNA downstream 702634 22881514 ~ 22928405 (-) True AMCG00006855
AMCG00006876 mRNA upstream 97376 23849645 ~ 23868247 (-) True AMCG00006876
AMCG00006877 mRNA upstream 146890 23899159 ~ 23899569 (-) True AMCG00006877
AMCG00006875 mRNA upstream 168305 23920574 ~ 23925526 (-) True AMCG00006875
AMCG00006880 mRNA upstream 180131 23932400 ~ 23970204 (-) True AMCG00006880
AMCG00006881 mRNA upstream 219847 23972116 ~ 23994354 (-) True AMCG00006881
TU141596 other downstream 223832 23404175 ~ 23407207 (-) True G113050
TU140946 other downstream 2681203 20854057 ~ 20949836 (-) False AMCG00006813
TU140776 other downstream 3394833 20235856 ~ 20236206 (-) True G112420
TU140642 other downstream 3995114 19633237 ~ 19635925 (-) False AMCG00006774
TU140430 other downstream 5289829 18339270 ~ 18341210 (-) False AMCG00006754
TU142176 other upstream 2747746 26500015 ~ 26500681 (-) True G113530
TU142323 other upstream 3650331 27402600 ~ 27527348 (-) True G113645
TU142485 other upstream 4514993 28267262 ~ 28292598 (-) False G113775
TU142484 other upstream 4539186 28291455 ~ 28292598 (-) True G113775
TU142549 other upstream 4958950 28711219 ~ 28812548 (-) True G113833

Expression Profile