RNA id: AMCG00006874


Basic Information

Item Value
RNA id AMCG00006874
length 2825
RNA type mRNA
GC content 0.41
exon number 7
gene id AMCG00006874
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 23904764 ~ 23921123 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGGTTTTCAATCATGGCTGCCTCCACAATGTGCACGGTTGTTTCGTCCCTGAGCCGAAATAATTGTCATGTAGGTGTAATTCAAATGTTAAATCCCATTTACAGAGGGGCTGCTTATTCATCGGCACTGTCTTTAAACAACGGTGTCCAGAATAAAGTTTCATTAAGAGGTGGCGGTCAAAGGACTCTGGGCAGAAGACCAAAAAGAGAGTCTGGAGAGCCAAGAACTGAAAAGATGTCCGTGGACCAAGACTGGACCAGTGTGTACCCAACTGCGGCTCCATTTAGGCACAGCGCCGTGCCTCTCCCTGTCCGCATGGGCTATCCTGTTAAGAGAGGAGTTCCCCCAGAAAAGAAGGGTAATCTGGAGCTTATAAAGTGGCCTGGGGCCCTAGACAGTCACGCCAAGTGTGAGGAGCACTTTCCCATCAGAGTGAAGACCACGGAATACGTTTCAGCCGGACTTTCTGTCAGAAACCCAAAAGCCAGAGTGGTGACCCTCAGTgtaAAACTTTCCAGTTTGAACCTTGATGACCATGCACGGAAGAAGCTTCTTAAACTAGTAGGAGAGCGCTACAGCAAGAACACGGACACGCTTACCTTCACAGCTGACAGGTGTCCTCTGAGGAAACAGAATTATGACTATGCAATGTATCTCCTGACTGTTaaaacCGAGGCATGGGAGCAGCAGAAGACAGTGGCAGACATGGAGGAGTACCACTGGGAGAACAGCCCCTCCCAGAAGAATGTGCTGGACACCCTCCTGAGGATGAAGGGCCAAGGGGAGGCCTCCGCTGCTGACCGGGAGGAGCTCCTGAAGTCCTCCGCCATCCAAGACTACAGAGACTCCATCACCAGGCTGAAGAACGAAGGTGACAACGAGAGCACCCTCCAGCAGTACAGGGAGTCTGTCAAGAAACTGTTCAACCTCTAAGCAGGAGACTGACCGCCACCTCATCCGCTTCCAATAAAGTTAGCAAAGGGGCAGTGGGATGAAAAACTGAAGCACAGTTTTAAACTTCTGCACAGGAGGAATCAACATCTTCTTGCTTTTGTGTTTGAGACGggattaaaatgtgaaaataacccATTGAAGTGTTTTTACTACAGAAATGCACATATTGTTCCCTAACTTTTTCTCTCTTGGATGCTTCAGCATGTAGGTAGATAATACAGGTCTCCACAATGGAGTTCTCCAGACATGCTAATGACATTCATAATTCAAAAGAAGCAGATCCTCGAGTATTGTTGACTTGTGATCGATtccaaccaaaaacaaacacctttttaatttgaactgtTCTTGATCCATGACTCCAATGACAGAAACCTGTTTCCTCGACCCAAATTTGTGTCACAGACCCGGTACTGATCCGTTCTGGCTGGGATACTCCACATTCTGCCTTTTAAGAGGAAgtggggaaaaggaaaaaaacatcctgGTCTTAGGTGAAGAAAAGATTCATTCAGCAGTGGTTGAAATCATGGTACGCCCCTTGAGATTCCCGGTCGCCCTCTCAAAGTCCTTTCTTTGGTTAGGCGAGGCCAAAGGAAACTGAAGCTCGATGGTCTGAACTAATTGTTCTGTTGCTGTTCCAAGAACTTTAGAGTGATAGTAAGTCCAGCCAAACCAAATAACAAGGGTTTCTTCTTACATCTTTGTGTTAAGCAGCTTACCGAAGTTTGCTGAACAGAACTGAGCTTGTTCTCTTGCATGGAAGACACAAACAGTTCCTATCAATCCAATTCGGACATTTCTGCCAATGCAGTGAATGTCAATGCagttatttaacacattttcccaTTGAGAATCCACTCCCCAAGTTGACCAAGTCTGCTTTCAAGTGAGTGCAATATGAATTCCACTTTTCCATTTGGAAGTAGTCTTTTGATAGATGTTCCCCTTTAATATTGCTTTTAGAAACTGAGCTTTTTAAATTGACCTCAGACCGCAGATTTCTGGAGTCACAAATTAATTGGGTATAATTGATACACAAAGTGAATATTAGCCTCTTccttaaacaattatttcacacatttttctatttcatttagTGACCAAACAATTGCCACAGTTAATACAGTTATATTGTGGTACATATCAAAGTTATTATTCAAACTCTCCATTATTATCAAGAAGTGTCTTTAGTTAGGGAGATATTCTCCAACCCTGCTGCTGACAAGCATGAACATATTGAATCAGTGACTACAGATCACTTTATTATCAATGAATGCAAccaatatttgattttgttaagTAGCTGTATACAGAAAACCTAGAACTAAAATTGCATAACATTATGGCAAGAATACAAAgtcatgtttcttttatttcattcacAATATTTCTCCAAACattcattattcttttaaacaatTTCTTAAATGATATTTGTATACTTAGCATTTTCATTGAAGGAAACTAAATCTGTAATGCATTCTTTCAAAGTTCATTACATTTTACCTCCCTTTATGGTTCTGCACTGTTAGAAAAGCCAAAATCAGTATGTGAAAAGCAAGTGGTGGTGTTTAAATGCTGAAAATGCTTAACTAGGATAGAGCTTAGTTAAAATTATAAGAGACGAGATTTGAAGGTTTTAACGGAATTAAGTAATCATTTTTAGAACTCCAGATGTGTCTATTTATTGGCCTATCCATTTAAaagattatacatttaaagataacAGCTTAAAGTTCATCATTCATTTGAAAGCCATAAGGAATTTTGAAACTTTATCCTTTAtcatttaataaacacatagaagcaatattaaatatatatacttcagAAGGTCAGACAGGAAAAAAAGTGATCTATAGCAGAT

Function

GO: NA

KEGG:

id description
K17413 MRPS35; small subunit ribosomal protein S35

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141646 lncRNA upstream 183132 23721382 ~ 23721632 (+) True G113090
TU141628 lncRNA upstream 307545 23580515 ~ 23597219 (+) True G113075
TU141629 lncRNA upstream 307545 23580515 ~ 23597219 (+) False G113075
TU141602 lncRNA upstream 350023 23509149 ~ 23554741 (+) False AMCG00006865
TU141482 lncRNA upstream 946159 22957248 ~ 22958605 (+) True G112955
TU141731 lncRNA downstream 155630 24076753 ~ 24288917 (+) False G113159
TU141732 lncRNA downstream 155630 24076753 ~ 24288917 (+) True G113159
TU141736 lncRNA downstream 155630 24076753 ~ 24257385 (+) False G113159
TU141805 lncRNA downstream 449595 24370718 ~ 24372835 (+) True G113224
TU141814 lncRNA downstream 488934 24410057 ~ 24410304 (+) True G113233
AMCG00006869 mRNA upstream 276072 23623362 ~ 23628692 (+) True AMCG00006869
AMCG00006868 mRNA upstream 285371 23613000 ~ 23619393 (+) True AMCG00006868
AMCG00006871 mRNA upstream 308111 23596096 ~ 23596653 (+) True AMCG00006871
AMCG00006870 mRNA upstream 310373 23580895 ~ 23594391 (+) True AMCG00006870
AMCG00006872 mRNA upstream 323990 23574307 ~ 23580774 (+) True AMCG00006872
AMCG00006879 mRNA downstream 96949 24018072 ~ 24022643 (+) True AMCG00006879
AMCG00006878 mRNA downstream 110966 24032089 ~ 24036105 (+) True AMCG00006878
AMCG00006884 mRNA downstream 383573 24304696 ~ 24335880 (+) True AMCG00006884
AMCG00006885 mRNA downstream 416785 24337908 ~ 24347363 (+) True AMCG00006885
AMCG00006888 mRNA downstream 519308 24440431 ~ 24447563 (+) True AMCG00006888
TU141018 other upstream 2701563 21142865 ~ 21203201 (+) True G112600
TU140974 other upstream 2855726 21048336 ~ 21049038 (+) True G112567
TU140941 other upstream 2966594 20937497 ~ 20938170 (+) False AMCG00006811
TU139270 other upstream 10861316 13011184 ~ 13043448 (+) True G111197
TU138516 other upstream 14337413 9566213 ~ 9567351 (+) False AMCG00006565
TU141703 other downstream 110990 24032113 ~ 24036112 (+) False AMCG00006878
TU141783 other downstream 383656 24304779 ~ 24335916 (+) False AMCG00006884
TU141848 other downstream 587880 24509003 ~ 24587119 (+) False AMCG00006893
TU141973 other downstream 1696944 25618067 ~ 25618445 (+) True G113369
TU142014 other downstream 1893932 25815055 ~ 25832942 (+) True G113400

Expression Profile