RNA id: AMCG00006875


Basic Information

Item Value
RNA id AMCG00006875
length 2925
RNA type mRNA
GC content 0.43
exon number 3
gene id AMCG00006875
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 23920574 ~ 23925526 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGCGAGGCTAGGAAAGGCAACATGCGCATCCAGTCACCACGGAGGAGACGCACCTGTCACACACTGGACTCCGCGAGTAAAGACGCACTAGAAATCTTCATTCGTTTGCTGCAAACGCACAGCATGATTTAGCGGTGTCTGGCACGCCTCTGGAGCCGCCCGCGATGCCGGGCCCGTGGAGGGGGCTGCTGTTTCTGCTGGGTTTGCTGTGCGGCGCCGAGGCGAAGTGCTCGCCCACCACTTTCTACAAGAGCTGCTGGATCCGCCGCTTCCCCGGCGTCTTCATCGACGTGCTGCAGTCGCAGGGCCGCGGCGCGCAGCTGCTCGGGGTCTCGCAGGAGGACAGCGCGCTGCGCTGCAGCCGGACCTGCTGCCTGGCCAGCAacgCGTCCTGTAACCTTGCAGTGTTTCACTATGAGACCGTCCAGAGCAGCGTGAATTGCTTTCATCTGAATTGCCCCACGCTAGAGAGCTGCATCCTGAAACGAAGAAGTAATGTAATCTTGTACAACATCACAAAAGGAGTTGATCCTGACTTGCTTGTATTTGGGAAGCACTTCTCCTCCAGCCTCCGACTGTGGCCCAACCTGTCGTCCTCGAAGCTCAACTTCTCCGAGTCCTCCTCCACAGACAAACGGCACTTCCATCGACCTCCCTTCCCATCCTCCCTGACCCAGACCTCGCCTGGCAGCCAGGGCCGGACTCTGCCACAGAGTACCGACTGGGAAACGAGGAGCACTACTTCCACGGCCTTTGTTTCTGTCGCAACACGAGAGACGACCAGCGTTTCAAATGCTGTAGACACTTTCTCAACTGAGGTCGCTGTCGGACATTCGAGAGAGACGTCAACAGCTAACATCTACCCAGGGCCCCCTGTGCATTTCACAGCCGGCTCGCCAGCAACCAAGCCCTACTCCAACATTGCTATCCTGGCCCATTTTGACAGCAGCAAGCAGTACCCCAATGACACCAAAGGTTATGTGAGCAGGAACCACACATCAGAAGACGAGCCTGGTTCTCTGACGCCAGTGTGGGACATCGCCACTGGTACTCTGCTGGTTCCTGTGGTCATCTGCTCCAGCATCCTTCTGGCCTGCTGCTGTACCGTGCTATTTGCGGTCGGTTGGCGAAGCAGGAAGAGGGGTCACTACAGAACATCCTGGAGGGTCAAGAGGGGGTCCATGCGTTTGATAAAGTACGTTATTGTGAGGGAAAGCCTGTAAAGGGAAAGCCAACACTCAGCCCTCCAGCCATTGATACAGAAGCCCTCCTGCTGTCCAAATGATACATCTACAGTCTTCATACCACCCTTATggagcaaaaaatatatattttctttaaagaacaGTGAAGATCTGATTGTATTACTCTTCAAAAGTGAGTTTGCCATTCACTAATGCTTTTCTTTGTGGAATAGCAAGAATCTCAAGACCCAAAATATGACGTCACTAAAGGACTTAATTCCCCTCGATACCTTGACCTAGATCTGAAAGACCACCCCCACCGCAGTGACAAGAGCAGCTTTATGTTCCCATTATAACTCAATCTATAGGGCCTTTCTGTTTCACGCGAAATCCACCTGAAAAGTGTATTCTGCAAACAGACCTTTTCGTCACATGCAAAGGAGCTTGACTTCTCCCTAGAAACGCAAACCAAGAAGGAGAGACTAACTTGTTTTGAGAGCTGTGTGCGATAATTCCAGTGTCATGGATCAAGGAACAAGCCTGGGGATTTTGTTTGAGTGGGGCAGCTTACTGAAActtgagaaaacaaaagtaaaggTATCTGAATGGTTCACAActacttattttaaatgggaGACAAGGTCAAAATTAGCCATCCTTAATGCAGTTCTCTTAGAGAACATTCATTTATCAACAGTTTTCTAGGACAGAGATTTAGTTGGTGAACACATGTAGCAAGCAATTTCATTACTACTGCTGTTATGCCTTTCAATTCTGTCTCATTGTAGAAAAACATTTGTAGGTTTTCAGTTTTGCAAATATAGTGATTTTAAGGAGTCATAATACTATACAAGACTCAAACAACTTAATACAAAGTAAAAGAATACACTAACATGCACATTAATAAAGCATCCTCTTAAATCTAAAAAGCTAATCTAGGCCTACATATACTCTATTTAACTAATACTATATATGTCTATTAGAGTTGTCCAGATTTcctaaaaacttaaatgtagAAAAACCTTAGTAAATCGAAAGAAAGGTATTTAGTTTCTTGTTAGCACTGGTTTTTCACATTATTTGCACATATTATTCCATCGGCACATCTAAAATAACACTTCTCAACAATAGTCAGTGATttggaaaatgaatacatgtcTATGTTCTCTGTACTGGAGAAATGATCACGTTATCTGCTATAGATCACTTTTTTTCCTGTCTGACCTTctgaagtatatatatttaatattgcttctatgtgtttattaaatgaTAAAGGATAAAGTTTCAAAATTCCTTATGGCTTTCAAATGAATGATGAACTTTAAGCTgttatctttaaatgtataatcttTTAAATGGATAGGCCAATAAATAGACACATCTGGAGTTCTAAAAATGATTACTTAATTCCGTTAAAACCTTCAAATCTCGTCTCTTATAATTTTAACTAAGCTCTATCCTAGTTAAGCATTTTCAGCATTTAAACACCACCACTTGCTTTTCACATACTGATTTTGGCTTTTCTAACAGTGCAGAACCATAAAGGGAGGTAAAATGTAATGAACTTTGAAAGAATGCATTACAGATTTAGTTTCCTTCAATGAAAATGCTAAGTATACAAATATCATTTAAGAAattgtttaaaagaataatgaatGTTTGGAGAAATATTgtgaatgaaataaaagaaacatgacTTTGTATTCTTGCCATAATGTTATGCAATTTTAGTTCTAGG

Function

GO: NA

KEGG:

id description
ko00900 Terpenoid backbone biosynthesis
ko04130 SNARE interactions in vesicular transport

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141622 lncRNA downstream 351300 23568155 ~ 23569274 (-) False AMCG00006866
TU141619 lncRNA downstream 365835 23547797 ~ 23554739 (-) True G113066
TU141551 lncRNA downstream 597423 23322933 ~ 23323151 (-) True G113014
TU141550 lncRNA downstream 598803 23321077 ~ 23321771 (-) True G113013
TU141507 lncRNA downstream 765671 23153868 ~ 23154903 (-) True G112979
TU141786 lncRNA upstream 390206 24315732 ~ 24321862 (-) True G113209
TU141789 lncRNA upstream 405561 24331087 ~ 24335914 (-) True G113212
TU141806 lncRNA upstream 448166 24373692 ~ 24375929 (-) True G113225
TU141891 lncRNA upstream 746262 24671788 ~ 24673498 (-) True G113301
TU141978 lncRNA upstream 1466270 25391796 ~ 25392318 (-) True G113374
AMCG00006877 mRNA downstream 21005 23899159 ~ 23899569 (-) True AMCG00006877
AMCG00006876 mRNA downstream 52327 23849645 ~ 23868247 (-) True AMCG00006876
AMCG00006873 mRNA downstream 168305 23631039 ~ 23752269 (-) True AMCG00006873
AMCG00006866 mRNA downstream 349441 23568884 ~ 23571133 (-) True AMCG00006866
AMCG00006864 mRNA downstream 543769 23375367 ~ 23376805 (-) True AMCG00006864
AMCG00006880 mRNA upstream 6874 23932400 ~ 23970204 (-) True AMCG00006880
AMCG00006881 mRNA upstream 46590 23972116 ~ 23994354 (-) True AMCG00006881
AMCG00006882 mRNA upstream 100182 24025708 ~ 24031202 (-) True AMCG00006882
AMCG00006883 mRNA upstream 115551 24041077 ~ 24057825 (-) True AMCG00006883
AMCG00006887 mRNA upstream 427911 24353437 ~ 24357780 (-) True AMCG00006887
TU141596 other downstream 513367 23404175 ~ 23407207 (-) True G113050
TU140946 other downstream 2970738 20854057 ~ 20949836 (-) False AMCG00006813
TU140776 other downstream 3684368 20235856 ~ 20236206 (-) True G112420
TU140642 other downstream 4284649 19633237 ~ 19635925 (-) False AMCG00006774
TU140430 other downstream 5579364 18339270 ~ 18341210 (-) False AMCG00006754
TU142176 other upstream 2574489 26500015 ~ 26500681 (-) True G113530
TU142323 other upstream 3477074 27402600 ~ 27527348 (-) True G113645
TU142485 other upstream 4341736 28267262 ~ 28292598 (-) False G113775
TU142484 other upstream 4365929 28291455 ~ 28292598 (-) True G113775
TU142549 other upstream 4785693 28711219 ~ 28812548 (-) True G113833

Expression Profile