RNA id: TU141703


Basic Information

Item Value
RNA id TU141703
length 586
RNA type TUCP
GC content 0.54
exon number 4
gene id AMCG00006878
representative False

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 24032089 ~ 24036112 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGCGTCCAATGAGAGCGCTTGTTATTGGCAGGCCGGATCTATGTCGGAAGGGAGAAGGTGACATTTTACAAGAGCGGCGCTTTTTCAAGGGTGAAAACCAGGAGAAAAGCAGGAGGAATCGGCGCGAAAGTCCGACAGCATGTCCTCCCTGGTTAGGGCTGCCAGTGTGATCCGAGCCGGGACGCGGCTGCTGCGGAACGGAACCCAGCAAGTGGGCATCAGGAGGGCGGGGGGTGGCGTTCACATCGAGGCCCAGTACAGACAGTACCCTCAGCTCACCAAGAGCCAGAAGTTCCAAGCAGAGCTGCTCAGCGGGTTCATGTGGTTCTGGATCCTGTGGCACTTTTGGCACGACCCCGATGCAGTGTTGGGTCACTTCCCCTGGCCTGATGCCTCTCAGTGGACTGATGAGGAATTAGGAATCCCACCAGAGGAGGAGTAATGTAACCCATGATGATGGTTGAGAagCTATCTCAACCGTGGGACACTTTGCTGCCGAAGGGAGATGAGTGAATCTCTGGTTGCACCATCTGCGAGTCTTCTGTATTGTATATAagataataaatgtgttaatcaCAACTTGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141646 lncRNA upstream 310481 23721382 ~ 23721632 (+) True G113090
TU141628 lncRNA upstream 434894 23580515 ~ 23597219 (+) True G113075
TU141629 lncRNA upstream 434894 23580515 ~ 23597219 (+) False G113075
TU141602 lncRNA upstream 477372 23509149 ~ 23554741 (+) False AMCG00006865
TU141482 lncRNA upstream 1073508 22957248 ~ 22958605 (+) True G112955
TU141731 lncRNA downstream 40641 24076753 ~ 24288917 (+) False G113159
TU141732 lncRNA downstream 40641 24076753 ~ 24288917 (+) True G113159
TU141736 lncRNA downstream 40641 24076753 ~ 24257385 (+) False G113159
TU141805 lncRNA downstream 334606 24370718 ~ 24372835 (+) True G113224
TU141814 lncRNA downstream 373945 24410057 ~ 24410304 (+) True G113233
AMCG00006879 mRNA upstream 9470 24018072 ~ 24022643 (+) True AMCG00006879
AMCG00006874 mRNA upstream 110990 23904764 ~ 23921123 (+) True AMCG00006874
AMCG00006869 mRNA upstream 403421 23623362 ~ 23628692 (+) True AMCG00006869
AMCG00006868 mRNA upstream 412720 23613000 ~ 23619393 (+) True AMCG00006868
AMCG00006871 mRNA upstream 435460 23596096 ~ 23596653 (+) True AMCG00006871
AMCG00006884 mRNA downstream 268584 24304696 ~ 24335880 (+) True AMCG00006884
AMCG00006885 mRNA downstream 301796 24337908 ~ 24347363 (+) True AMCG00006885
AMCG00006888 mRNA downstream 404319 24440431 ~ 24447563 (+) True AMCG00006888
AMCG00006892 mRNA downstream 443906 24480018 ~ 24502346 (+) True AMCG00006892
AMCG00006893 mRNA downstream 473936 24510048 ~ 24520705 (+) True AMCG00006893
TU141018 other upstream 2828912 21142865 ~ 21203201 (+) True G112600
TU140974 other upstream 2983075 21048336 ~ 21049038 (+) True G112567
TU140941 other upstream 3093943 20937497 ~ 20938170 (+) False AMCG00006811
TU139270 other upstream 10988665 13011184 ~ 13043448 (+) True G111197
TU138516 other upstream 14464762 9566213 ~ 9567351 (+) False AMCG00006565
TU141783 other downstream 268667 24304779 ~ 24335916 (+) False AMCG00006884
TU141848 other downstream 472891 24509003 ~ 24587119 (+) False AMCG00006893
TU141973 other downstream 1581955 25618067 ~ 25618445 (+) True G113369
TU142014 other downstream 1778943 25815055 ~ 25832942 (+) True G113400

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
striped catfish (Pangasianodon hypophthalmus) TU327329 False 484 TUCP 0.55 5 NC_047612.1 3913634 ~ 3988660 (+)