RNA id: AMCG00006882


Basic Information

Item Value
RNA id AMCG00006882
length 1602
RNA type mRNA
GC content 0.57
exon number 7
gene id AMCG00006882
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 24025708 ~ 24031202 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCTGTCAGTTTCAGGCTATTTGTGAACCCAACCACGATGTTGACCCACACCCTCATCCCGCAATGCATTGCCCACAAGAACCTCTTTGGAGCCATTTGTGAAGTTACCATCACATTTGTGATCGACACCTCAGGCAGCATGTATCTCAAACTGGGCAAAGTGAAGGACCATCTCATTGAAGCGCTCTTCCACAGGGCACAGACGGTACCACACTTCACCTTCAACCTGGTGGAGTTCAACAGCGAGGTGAGGAGGTGGTGCGAGCGCTCGGTCCAGTCCAGTCTGCTCTCTCTGTCAGACGCAGTGTCCTGGATCCGAGGACTGGAGTGCCACTCGGTCTCGGACACCGGGGCCCTTCTAACTGCCCTGAAATGTGCTCTGAGTGACCCTGGGTGCCAGGTTGTGTGCCTGATCACAGACGGGCTTCTACAGAGCCCTGCAGAGGAAGTGCGGCCCTGTGTGGCACTGTGGCCCCCAATCCATGTGGTGTACCTCAGCGAGGAGAGGGGTCAGCACTCCCCGCAATGGCTGCTGCAGGAAATGGCAAGGGAGACTGGAGGCACTTTCACGGTGTCGGGAGCACTGGAACCTGTTTGCAGTAGGCACAGGCCCGTTCCCTGGGCAGGAGGTACAGACTGCTGTTCAGGATGTCACAGAACACAGAGCATCTGTCCACATGTCCGGTTCTGTAAGTCACCCGTGGACTCGGCACTGGAAGGCAGTTTTGTTGATGGAGCCCATGGAGGTCCTATGCTTGTCAGAGGAGCACGAGTCCTGGCCAGAAGACACCAAGATAGGCTGTACTACCCCGGACACCTCTGCCAGGAAGCCGTAGGTTTAGGCAGGAGGTTCACGGTGGAGTTCGACAGAGGGAAGTGTTTCCGGGGAGGGGCAGGAAGTCGTATACAGGAGACTGCCCTCTGTGACCTGCTGCACTTTGAAGATGCCTGGCGGTTCCCTGTCTGCCCAGGAGACTCAGTCCTGGCTCCCTGGGAAAGTGGAGCAAGCCAGTATGGGCCAGGGACTGTCCTACTGGGGCAGGAGAACAGGAGCAACACACAAGAGGTGTGCAGCAGCGATCAGGGTTTGGTGGTGACTTTTTGGAACGGACGCACTGAGAAAGTGCCACCTGGGCAGGCGGTGAGAATCCCCCGCCAGCTCTATGAGTTCCTGGTGCTGGAGCTCCAAATGCCAGCCACCGCCAGGGAGAGTCTCCAGCAGTCTGTCCAGCATTTTCCCATGATGGCACCTCCTGGGTACAGGGCCTGGGGATCACTGGCTGCCTGGAGCTGCCTGGCCCCAGCCTGCTCAGATGCCCACAGCTACTTCACAGCTGACATCGCCTCTACGCCTATAAGCTCACAAGGCAGCCGTGGACAGACACCAACAGTGCAGAGGGCCCAAGCCCAGGGAGTtttgagagagaaggagagatcACTTACTAGAGCCCGCTCTTTGCCAGTGAAGAACAGCAGGACTGGTGTGGTGGGGACCCAGAAAGagaagtgtgagagagagatctgcAGAGAGACAAGACAGCAAGAAAAAGCAAAGTGGTGGACAACACAACAGGACAGTGGTTTTGATGTGCTCTGTTAG

Function

GO:

id name namespace
GO:0005657 replication fork cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141622 lncRNA downstream 456434 23568155 ~ 23569274 (-) False AMCG00006866
TU141619 lncRNA downstream 470969 23547797 ~ 23554739 (-) True G113066
TU141551 lncRNA downstream 702557 23322933 ~ 23323151 (-) True G113014
TU141550 lncRNA downstream 703937 23321077 ~ 23321771 (-) True G113013
TU141507 lncRNA downstream 870805 23153868 ~ 23154903 (-) True G112979
TU141786 lncRNA upstream 284530 24315732 ~ 24321862 (-) True G113209
TU141789 lncRNA upstream 299885 24331087 ~ 24335914 (-) True G113212
TU141806 lncRNA upstream 342490 24373692 ~ 24375929 (-) True G113225
TU141891 lncRNA upstream 640586 24671788 ~ 24673498 (-) True G113301
TU141978 lncRNA upstream 1360594 25391796 ~ 25392318 (-) True G113374
AMCG00006881 mRNA downstream 31354 23972116 ~ 23994354 (-) True AMCG00006881
AMCG00006880 mRNA downstream 55504 23932400 ~ 23970204 (-) True AMCG00006880
AMCG00006875 mRNA downstream 100182 23920574 ~ 23925526 (-) True AMCG00006875
AMCG00006877 mRNA downstream 126139 23899159 ~ 23899569 (-) True AMCG00006877
AMCG00006876 mRNA downstream 157461 23849645 ~ 23868247 (-) True AMCG00006876
AMCG00006883 mRNA upstream 9875 24041077 ~ 24057825 (-) True AMCG00006883
AMCG00006887 mRNA upstream 322235 24353437 ~ 24357780 (-) True AMCG00006887
AMCG00006886 mRNA upstream 327979 24359181 ~ 24367936 (-) True AMCG00006886
AMCG00006889 mRNA upstream 346597 24377799 ~ 24388627 (-) True AMCG00006889
AMCG00006891 mRNA upstream 357428 24388630 ~ 24407218 (-) True AMCG00006891
TU141596 other downstream 618501 23404175 ~ 23407207 (-) True G113050
TU140946 other downstream 3075872 20854057 ~ 20949836 (-) False AMCG00006813
TU140776 other downstream 3789502 20235856 ~ 20236206 (-) True G112420
TU140642 other downstream 4389783 19633237 ~ 19635925 (-) False AMCG00006774
TU140430 other downstream 5684498 18339270 ~ 18341210 (-) False AMCG00006754
TU142176 other upstream 2468813 26500015 ~ 26500681 (-) True G113530
TU142323 other upstream 3371398 27402600 ~ 27527348 (-) True G113645
TU142485 other upstream 4236060 28267262 ~ 28292598 (-) False G113775
TU142484 other upstream 4260253 28291455 ~ 28292598 (-) True G113775
TU142549 other upstream 4680017 28711219 ~ 28812548 (-) True G113833

Expression Profile