RNA id: AMCG00006885


Basic Information

Item Value
RNA id AMCG00006885
length 2169
RNA type mRNA
GC content 0.45
exon number 6
gene id AMCG00006885
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 24337908 ~ 24347363 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCCTGACTTGCTATTACAATTGGTCTGTTTGCCTGGGCTGCAGCGTGCGGGGCCTATAGTCTCAGAGCAGTGTGTGTCGGACCCGTCCCTCCGTCAGCCCCTGCACTGCACCACAGACAAGGGGTGGCTGAGCACCAGCGGTACCCTGCGATTTCCCCTCTCTGCAAAATGATCACATTTGGCTTAACAATTGTCAGACATGGTGAAACATGGTACAATAAGGAGAGACTGCTACAAGGTCAGGGTGTGGATGAGCCCTTGTCTGAAATGGGGGTGAAGCAGGCTGAAGCTGCGGGCCAGTACCTCAAGGATGTGAAGTTCACAAATGTGTTCTCCAGTGATCTGCAGCGCGCTAAACAGACAGCTGCGATAATCATGCGGAGTAACAATCACAGCCCCGGCATCACAATAATCTGCGACCCCAGACTCCGCGAGAGAAGCTTTGGCATCGCAGAAGGGAAGCCAGTGAACAGCATGAAGGAAATGGCCAAGGCGGCGGGGCAGCAGTGTCCACATTTCACACCTCCAGGGGGAGAGACCCAGGACCAGGTGAGGTCACGGGCAAAGGAGTTCATCCGGTCCCTCTGTCAGAGGATGGCAAGTGAGCACCTGGCCTGCAGCGGTCCAGAGAGCACGGACGGGCCCCCGCCTTCGGCCTGTGAGGGAGACGCGTGCCCTCCTTGTTCCTCCGCCACAAACAGCTGCAACCACCCTGCGGATGGGGCCCTCCACCTGGCAGCGCACGCTCTGGTTGTCAGCCATGGCACCTACATGAGGAACGTGGTGAAGCACTTTGTGGAGGACCTGGACTGCGCCCTGCCGCACAGTCTCAAAATGTCGCAGATGTTCTCCGCCTGCCCCAACACGGGCATGTGCCGCTTCATCCTCACTCTGGAGCGCAACCGGGAAGTGGCGCCGTCTGCCGAGTGCGTCTTCATCAACAGGAAAGACCACTTGGCGTCACTGCGGGAAGACGAATAGCCTTGAGCTCAAGGACAAGACAAATGCATAATCCGTGTCTTCAAGCTGCTACCTGCTCAAAAAGAGGAATGATgagcacagcacagaaacaagagtggtatttatttatttattttcatgtgcttTCGGATGGTCATTCTTGAAAGCTCAGTTGATCTCCCATGTATACCGTCTGTCTTCCTTCTGATAATACTTTAGTTTCCTGTGCTAAGCAATTGTGAGTACATAAGAAGCCACTTTCCTTGGTACAATAGTCACTTTTGAAAAGGTTTGCGCACacatgttttgtgattttaaggTGGTGTACCCAGGGGAAGCAACACTGTAACCTGGATGAGCTGTGTACATTGTTAATGAAATGTGATCTTTTGGCAATACTAGTGccagaagaaaaaactaaaatcaaaattgtaaaaaaagaaCCACACAAAAACTCTAACAAAGCAACTCAGTTGACAGTGTTTCCAGTCAGAGCAGTTTCTGATgaagcaatgcaatgcaaagtcCTATACCGCAGTtgaattttttttgtaaaacatttgtggtttattcccagaatgcactacATGATGACTTTTAAGTTGATTGCtgaagttatgtttttttaatgtcttcctggaacattttgtatgtgtgtgtgtatattaaaatatatatatataacaggaATTGCGCACAATAAAAGGAACGGTCATATTCAGAGTTTTTTCCATGAAACTTAGGCCTAGatgaaatgaaaactttgacctacccgcaAATTTGGCTAAACTGTACCAAATACTGTACtgctatttaatttattcttagaAGTAACTTTCTactattaaacaatattaacattggTACAATTTTGCACTTTGCAGTTCGCAGGGCGTTTAATTTCTACTAGGCCTTAGTTTAGCATAGTTTTCTGAAAAGGATAAATAAATTGTCCTAATGTGACcgtcaaaatggaaaatgtattgtttgccATCTGGAAAATTGATTGTTTGCTGTCTTTAAATTTATAGTTGGCACTTTACaacttaattgtgttttcaattGTCATAGAGCACGATGTAGAATATATGAATTTGGCCCAAaactatattgtttttgtgttcccaattgaaagtattttaattatatatttatgaagaaatggtaaattattcattttaatttaataaacctTTATTCTGATATTTG

Function

GO: NA

KEGG:

id description
K14634 TIGAR; fructose-2,6-bisphosphatase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141731 lncRNA upstream 48991 24076753 ~ 24288917 (+) False G113159
TU141732 lncRNA upstream 48991 24076753 ~ 24288917 (+) True G113159
TU141736 lncRNA upstream 80523 24076753 ~ 24257385 (+) False G113159
TU141646 lncRNA upstream 616276 23721382 ~ 23721632 (+) True G113090
TU141628 lncRNA upstream 740689 23580515 ~ 23597219 (+) True G113075
TU141805 lncRNA downstream 23355 24370718 ~ 24372835 (+) True G113224
TU141814 lncRNA downstream 62694 24410057 ~ 24410304 (+) True G113233
TU141872 lncRNA downstream 326262 24673625 ~ 24676576 (+) True G113283
TU141921 lncRNA downstream 895202 25242565 ~ 25260402 (+) True G113319
TU141961 lncRNA downstream 1044492 25391855 ~ 25395392 (+) True G113357
AMCG00006884 mRNA upstream 2028 24304696 ~ 24335880 (+) True AMCG00006884
AMCG00006878 mRNA upstream 301803 24032089 ~ 24036105 (+) True AMCG00006878
AMCG00006879 mRNA upstream 315265 24018072 ~ 24022643 (+) True AMCG00006879
AMCG00006874 mRNA upstream 416785 23904764 ~ 23921123 (+) True AMCG00006874
AMCG00006869 mRNA upstream 709216 23623362 ~ 23628692 (+) True AMCG00006869
AMCG00006888 mRNA downstream 93068 24440431 ~ 24447563 (+) True AMCG00006888
AMCG00006892 mRNA downstream 132655 24480018 ~ 24502346 (+) True AMCG00006892
AMCG00006893 mRNA downstream 162685 24510048 ~ 24520705 (+) True AMCG00006893
AMCG00006894 mRNA downstream 303297 24650660 ~ 24653870 (+) True AMCG00006894
AMCG00006898 mRNA downstream 673767 25021130 ~ 25036473 (+) True AMCG00006898
TU141783 other upstream 1992 24304779 ~ 24335916 (+) False AMCG00006884
TU141703 other upstream 301796 24032113 ~ 24036112 (+) False AMCG00006878
TU141018 other upstream 3134707 21142865 ~ 21203201 (+) True G112600
TU140974 other upstream 3288870 21048336 ~ 21049038 (+) True G112567
TU140941 other upstream 3399738 20937497 ~ 20938170 (+) False AMCG00006811
TU141848 other downstream 161640 24509003 ~ 24587119 (+) False AMCG00006893
TU141973 other downstream 1270704 25618067 ~ 25618445 (+) True G113369
TU142014 other downstream 1467692 25815055 ~ 25832942 (+) True G113400

Expression Profile