RNA id: AMCG00006888


Basic Information

Item Value
RNA id AMCG00006888
length 2818
RNA type mRNA
GC content 0.40
exon number 8
gene id AMCG00006888
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 24440431 ~ 24447563 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTTTATAAAATCAGGGTTGTAGACAACAACTCTCCATTATACTATATGACTTTTCTGTATAGCTTGATTATCATAACCTATCAACTGcatctgttttagtttttttctctgtttacaggaacaaaaaaactgtAGATTATTCACAGTTTGGAGATCTTGATGACGATGAGGACTTTGCCTGTGTGAAAGCACCACCAACGAAGAAGCCGCGAGTGACATCGAATCCAGAGGAGTCAGAGAGAAGGCCGAAAACTGTCAAAGCCTCAAGCCAAGAGTCTTTTTCACAGCCCAAACCTAGCAAAGAAAGATTACCTCTGGATGACAAACTGTATCAAAGGGACTTAGAAGCTGCTCTTACATTGTCAATGCTACAGACAGCCGAAGACAATGGTGAAGTATTTTCACTGAATGAAAACGGTGGTAAGATTCAGCCAACCATCGACGTTGAAAAGATGGATGGGTGTAGATTGCTCTCCAACTGTAGCGTGGATATCAACCTTTTGggCTTGGATAAGATTACAGATGAGCAGGACTCTCCTGTCTGCCCAGTTCGGCAGAGGCAGGCCGCCTCGAAGGCCACAGAGCAGCAGAGACGGATCCTGCTGGATGAAAGGGGCAGTGATGCCGAGGCTGAGCCCGATGAGGCGTATGAGCCCACCTGCACACCAGATATGTACTCAGGGAGCGATGCAGATTTCAGcaatgaagaagaagaggatGAAGAATTCACTGTGTcgaagacagacagaaagaaggCAAAGGccaaggagagaaaaacacaacccccgagatcaaagaaagaaaagaagccCTCGAAGTCAAGACTTCATGCAACAGTGACCCCTACAGTGGGGAGCCCCAGGCCAGCCGCCAGCAGACCTAGCCCCGTCCCGAAGAAGCCCTCTACCCCTCCTCTGACTGCCTCCAAACCGCTGACTGCCCAGAGTCCAGCTGGGGTGAAGATACCAAAGTGGACCCCACCAGGTCAGCTTGGAAAAAGCCCAAACGCAAGCAAGGCCGTCTCAGTGAAGTCTCCGGGACAGGGACTGCGATTAGGGCTCTCCCGGTTTGCCAGAGTGAAGCCTCTACATCCGACTGCTGCAGGGAACTGAGCTCCAGTCCATCCTCCCAAGGAtcctctctgtatgtgtgtatagtgGTTTGCTGTGTTCtctcagaaacaaaatattgcagcgattccttccacttcctgtcGCAGTGCATATTGCTGTCAAGCTTTTAGTTATTTTGgttaagtgtttatttattgtgcgtttgctaattttaaaaagcatgataTTGGGAGCATTTTTTTCTGCCTTTACGATATCAAGAATTGTGGGTGTTTGTGAaccacagcacaacacagtaaTCCTTGAAGAAAATAgcactttaaaacattaattgtgaATTCCTTAAAAGCATGTCTTACTTTCTgtctttaaacaatattttggcTTTGGATGCAAATTTCTCTTAATGTTCTTAATGACCTGCATGATACATTATTTCCCCCATACCTCTTATATACTTGTTAATGTTTAAACTATTCTAGtacttcttttcatttttgagAGTATTTTCGCTTTCGCTTTTATGAAATTGATGCTTTTCATGCTCCCAGTAATAGTTTTGTCAACAGGGCAGTACATTGCAGGGTAGGGATAGATGAAGATTGTACAGATTTAAACCTGATTAATAgtataatttacaaatattttgtagGAGTGGCTTAACACCACCAGTAAGTGTATTGGCTGTTACATACAAGGGTTGTGTGCTGGTGCAGTTCGATCCAGGAGTTTATTCAGTGACAGCGTTTTAGGTTGTTTTGTTCCTTATTTATGCTTCACGTAGACCACAATGGATTCtgataacaaaagcaaaagattCATTCTGTCATCAAATCCTTGAAGAGCACTGAACCAAAGGAATCTTTTAACACATACAACTATGTTGAAAGTCTAGGGACAGTCAGGATTTTATTCAATAGGTTTTTTCAGCCTTTAATATGTGCAACCTTCTACAGAATACATCAGCATTTTAGTATGTTCATCATTGAATAATTTCTAACAAAGCAACCTGCTTGTTATTTTCGTTCTGTTATGTTTCTTTAATATGCTATACTTTGTgttagcagtttttttttttctttctttccaaatTTCTATGAACCACTTCTAGATAGTTTAAAATAACTTCTGTACAGATGTTGCATTGCTGATTGGCAGGAAGCACATTAGCATCGCCCCATGATGATAAAACGTCAGCAGGTATTCTAGGTAACATACTTATCTGTGACCTATTCAGTCATTTCAGATGagccttttatatatatttacccaATACTCTGGGAAGTAAGAAATGTATTACGACTAAAGCAGTATAAATGAACAACTATGTATCTGGTCATGTTATGTTATCTTATCCAGGGtatgattaaaacaaagaactaCAAGATTTTATAAATCTATTCATTGgatatttatacttttataaacATGTGAAATGCCAGGCAGAAGTCTTTATATCCTTCCTTTTGGAGCAAATACTAATAATTTCTGACCAGTAACTTGCTGCATGAGGACATCAGGTGGCCTTCTCTGACACTGTATGTGGAGTTCACTTCCAGGAATGCCAGAAACAGTGAACTATGCCTTTATTCAATCACCGTAATTTCATCCTTGAAATGAATGTCATATTTTAgcaaaaaattgaaatgttttcatgcTTTGTGGATTTAGATGTGTACAGATTTTAAgcctttgcaaaacaaatttgtatttttgtacaaaaataaaatatgaataaacatcC

Function

GO: NA

KEGG:

id description
ko03040 Spliceosome
ko04111 Cell cycle - yeast

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141814 lncRNA upstream 30127 24410057 ~ 24410304 (+) True G113233
TU141805 lncRNA upstream 67596 24370718 ~ 24372835 (+) True G113224
TU141731 lncRNA upstream 151514 24076753 ~ 24288917 (+) False G113159
TU141732 lncRNA upstream 151514 24076753 ~ 24288917 (+) True G113159
TU141736 lncRNA upstream 183046 24076753 ~ 24257385 (+) False G113159
TU141872 lncRNA downstream 226062 24673625 ~ 24676576 (+) True G113283
TU141921 lncRNA downstream 795002 25242565 ~ 25260402 (+) True G113319
TU141961 lncRNA downstream 944292 25391855 ~ 25395392 (+) True G113357
TU141962 lncRNA downstream 973095 25420658 ~ 25420875 (+) True G113358
TU141976 lncRNA downstream 1241172 25688735 ~ 25689111 (+) True G113372
AMCG00006885 mRNA upstream 93068 24337908 ~ 24347363 (+) True AMCG00006885
AMCG00006884 mRNA upstream 104551 24304696 ~ 24335880 (+) True AMCG00006884
AMCG00006878 mRNA upstream 404326 24032089 ~ 24036105 (+) True AMCG00006878
AMCG00006879 mRNA upstream 417788 24018072 ~ 24022643 (+) True AMCG00006879
AMCG00006874 mRNA upstream 519308 23904764 ~ 23921123 (+) True AMCG00006874
AMCG00006892 mRNA downstream 32455 24480018 ~ 24502346 (+) True AMCG00006892
AMCG00006893 mRNA downstream 62485 24510048 ~ 24520705 (+) True AMCG00006893
AMCG00006894 mRNA downstream 203097 24650660 ~ 24653870 (+) True AMCG00006894
AMCG00006898 mRNA downstream 573567 25021130 ~ 25036473 (+) True AMCG00006898
AMCG00006899 mRNA downstream 593029 25040592 ~ 25041958 (+) True AMCG00006899
TU141783 other upstream 104515 24304779 ~ 24335916 (+) False AMCG00006884
TU141703 other upstream 404319 24032113 ~ 24036112 (+) False AMCG00006878
TU141018 other upstream 3237230 21142865 ~ 21203201 (+) True G112600
TU140974 other upstream 3391393 21048336 ~ 21049038 (+) True G112567
TU140941 other upstream 3502261 20937497 ~ 20938170 (+) False AMCG00006811
TU141848 other downstream 61440 24509003 ~ 24587119 (+) False AMCG00006893
TU141973 other downstream 1170504 25618067 ~ 25618445 (+) True G113369
TU142014 other downstream 1367492 25815055 ~ 25832942 (+) True G113400

Expression Profile