RNA id: AMCG00006890


Basic Information

Item Value
RNA id AMCG00006890
length 1527
RNA type mRNA
GC content 0.50
exon number 13
gene id AMCG00006890
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 24421102 ~ 24439498 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTGCTATTCAGAAACTACAGGTTCATCAGCTGATGAAGTCACAGGTCCGCAGCCCGCAATGAAGAAGAACAAGGCCAAAGTGTCGAGCACAGAAAAGCAGTTCGAGTTCCACTTCCACGCCGGGCGCCAGGCGTGCGCTCTCACCGTGCCTGTGAGGTTCCCCATGGAGGAAAACGTCAGTGATCTGCATgggaggctgctgctgctgcacagacTACCTTGTTTCGTCGAAAATGATTTAAGGAGTGCCCTCTGCAAGTTTATCGATGAAGAATCCATTAAGGACTATGACCAAGAAGCTGAGTTATCCTTGGAAAGACTCAGGACGGGGGAAGTGGACATTGAACTACTAACTAGTGCTTGGTCAAAGGCGTATGCTGAAACAACTCTAGAGCATGCTAGGCCTGAGGAGCCCAACTGGGACGAAGATTTTGCTGATGTTTACCATGACCTGATCCACTCTCCAGCCTCAGAGACTCTGCTCAACCTGgaacacaattattttgtcaGCATCTCAGAACTCATCAGCGAGAGAGACATGGAGTTAAAGAAATTACAGGAAAGGCAATCAGTAGAAATGGATAAAGTGATGCAGGAGCTGGGGAAGACGATGAGTGACCAGGATGTGAATGCAGTTGCCTCTCAGCATTTTGATGCCCAACAGgttttagaaaataaatgggCCAATGAGCTGAAACAGGTGACAACAATCCAGAAGCAAGAATACCAGGAATGGGTGATGAAACTGCATCAAGACTTGCAGAACCCCAACAACAGTGCCATTAATGAGGAAATTAAAGTGCAACCGAGCCAGCTGCGGGAATCTCAGGAAGCCAGTGACCGACTGTTTGAAGAGCAGAGGCAACTAGAAGAGAGCTTCACCATCCACTTAGGCGCCCAGTTAAAGACGATGCATAATCTCCGTCTCGTCCGGGCGGACGTGCTGGACTTCTGTCAGCACAAGCAGCACCAGCGCAGCGGGGTGAAGCTGCAGCGGCTGCAGACAGCACTCTCGCTCTACTCGTCCTCTCTGTGCGGCCTGGTGCTGCTGGTGGACAACCGCATCAACTCCTACAGTGGAATCAAGAGAGATTTTGCCACTGTGTCTCAAGAGTGCACTGACTTCCACTTCCCTCGCTTGGAGGAGCAGCTGGAGGTGGTCCAGCAGGTGGTGCTGTATGCCCGAGCACAGAGGAACAGCAAGTTGAAGGACCAGCCTGaTGTTCCCAGAAATGGTAGCTGTGAGGATAAGTCCAAAAACCTTGAAAGAAATCCTTCAAATATTCTCCCAgGTGAATTCTACATCTCCCGCCACTCCAATCTCTCTGAGGTGCACATTGTCTTCCATCTTTGTGTGGATGACAACGAAATGACCATACCTTGGTGCCTGAAACGTGCAGAATTAGTTTTCAAATGTGTGAAAGGCTTTATGATGGAAATGGCATCCTGGGATGGGGGGATTTCACGAACAGTCCAGTTCCTTGTTCCACAGGTAGGGTGTCCCGTTGTCACTTATATTGGTTGA

Function

GO: NA

KEGG:

id description
ko03022 Basal transcription factors
ko03420 Nucleotide excision repair

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141806 lncRNA downstream 45173 24373692 ~ 24375929 (-) True G113225
TU141789 lncRNA downstream 85188 24331087 ~ 24335914 (-) True G113212
TU141786 lncRNA downstream 99240 24315732 ~ 24321862 (-) True G113209
TU141622 lncRNA downstream 851828 23568155 ~ 23569274 (-) False AMCG00006866
TU141619 lncRNA downstream 866363 23547797 ~ 23554739 (-) True G113066
TU141891 lncRNA upstream 232290 24671788 ~ 24673498 (-) True G113301
TU141978 lncRNA upstream 952298 25391796 ~ 25392318 (-) True G113374
TU141979 lncRNA upstream 956038 25395536 ~ 25398698 (-) True G113375
TU141993 lncRNA upstream 1277027 25716525 ~ 25716987 (-) True G113389
TU141994 lncRNA upstream 1278919 25718417 ~ 25718792 (-) True G113390
AMCG00006891 mRNA downstream 13884 24388630 ~ 24407218 (-) True AMCG00006891
AMCG00006889 mRNA downstream 32475 24377799 ~ 24388627 (-) True AMCG00006889
AMCG00006886 mRNA downstream 53166 24359181 ~ 24367936 (-) True AMCG00006886
AMCG00006887 mRNA downstream 63322 24353437 ~ 24357780 (-) True AMCG00006887
AMCG00006883 mRNA downstream 363277 24041077 ~ 24057825 (-) True AMCG00006883
AMCG00006895 mRNA upstream 244510 24684008 ~ 24715289 (-) True AMCG00006895
AMCG00006896 mRNA upstream 286994 24726492 ~ 24755821 (-) True AMCG00006896
AMCG00006897 mRNA upstream 345100 24784598 ~ 24805892 (-) True AMCG00006897
AMCG00006900 mRNA upstream 522676 24962174 ~ 24969473 (-) True AMCG00006900
AMCG00006902 mRNA upstream 692314 25131812 ~ 25145341 (-) True AMCG00006902
TU141596 other downstream 1013895 23404175 ~ 23407207 (-) True G113050
TU140946 other downstream 3471266 20854057 ~ 20949836 (-) False AMCG00006813
TU140776 other downstream 4184896 20235856 ~ 20236206 (-) True G112420
TU140642 other downstream 4785177 19633237 ~ 19635925 (-) False AMCG00006774
TU140430 other downstream 6079892 18339270 ~ 18341210 (-) False AMCG00006754
TU142176 other upstream 2060517 26500015 ~ 26500681 (-) True G113530
TU142323 other upstream 2963102 27402600 ~ 27527348 (-) True G113645
TU142485 other upstream 3827764 28267262 ~ 28292598 (-) False G113775
TU142484 other upstream 3851957 28291455 ~ 28292598 (-) True G113775
TU142549 other upstream 4271721 28711219 ~ 28812548 (-) True G113833

Expression Profile