RNA id: TU141848



Basic Information


Item Value
RNA id TU141848
length 703
RNA type TUCP
GC content 0.49
exon number 7
gene id AMCG00006893
representative False

Chromosome Information


Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 24509003 ~ 24587119 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TACAGGATTTCTGCACAGACGGTAGAAAGATGGCGGCTTTGGCCCTCCGCTGTCGTCCTGTGGGTGTCCTTTCTCGGTTTTCCTGTGCTGGTTCTCCAGCTGTTTTATCAGCTGTCCCCATTGTGATTCAGCAGAGGAAGGTCCACTATGCGCTGATCCCTCGAGGCAAAGGGGGACGGTCCTCCTTCAGTGGAATAGCAGCTACAGTTTTTGGAGCGACAGGCTTTCTTGGCAGATATGTGGTCAATCGCCTAGGTCGCATTGGTTCTCAGGTCATAATCCCCCATCGCTGTGACCAGTATGATCTCATGTACCTGAAACCTATGGGAGATCTTGGACAAATCATTTTTTTGGAGTGGGATCCTCGAGATAAGGAATCCACCAGACGTGCACTGGCTCACTCCAATGTGGTCATCAACCTTGTCGGAAGAGAATGGGAAACGAGGAACTTCCGGTTCGAGGACGTTCACGTTACCATCCCAAAGGAGATTGCCAAAGCTGCAAGAGAGGCTGGCATCCAAAAATTTATCCACATGTCCCACCTCAATGCTGACATTCGTAGCCCCTCTAAATACCTGAGGACCAAGGCTGTTGGAGAGGCTGCAGTGAGAGAAGAATTTCCCGATGCAATAATAATGAAGCCGTCTGAAATGTTCGGAAGAGAAGACCGTTTTTTCAACCATTTTGCAAacatgtgctggtt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU141814 lncRNA upstream 98699 24410057 ~ 24410304 (+) True G113233
TU141805 lncRNA upstream 136168 24370718 ~ 24372835 (+) True G113224
TU141731 lncRNA upstream 220086 24076753 ~ 24288917 (+) False G113159
TU141732 lncRNA upstream 220086 24076753 ~ 24288917 (+) True G113159
TU141736 lncRNA upstream 251618 24076753 ~ 24257385 (+) False G113159
TU141872 lncRNA downstream 86506 24673625 ~ 24676576 (+) True G113283
TU141921 lncRNA downstream 655446 25242565 ~ 25260402 (+) True G113319
TU141961 lncRNA downstream 804736 25391855 ~ 25395392 (+) True G113357
TU141962 lncRNA downstream 833539 25420658 ~ 25420875 (+) True G113358
TU141976 lncRNA downstream 1101616 25688735 ~ 25689111 (+) True G113372
AMCG00006892 mRNA upstream 6657 24480018 ~ 24502346 (+) True AMCG00006892
AMCG00006888 mRNA upstream 61440 24440431 ~ 24447563 (+) True AMCG00006888
AMCG00006885 mRNA upstream 161640 24337908 ~ 24347363 (+) True AMCG00006885
AMCG00006884 mRNA upstream 173123 24304696 ~ 24335880 (+) True AMCG00006884
AMCG00006878 mRNA upstream 472898 24032089 ~ 24036105 (+) True AMCG00006878
AMCG00006894 mRNA downstream 63541 24650660 ~ 24653870 (+) True AMCG00006894
AMCG00006898 mRNA downstream 434011 25021130 ~ 25036473 (+) True AMCG00006898
AMCG00006899 mRNA downstream 453473 25040592 ~ 25041958 (+) True AMCG00006899
AMCG00006901 mRNA downstream 491268 25078387 ~ 25114339 (+) True AMCG00006901
AMCG00006903 mRNA downstream 568967 25156086 ~ 25214360 (+) True AMCG00006903
TU141783 other upstream 173087 24304779 ~ 24335916 (+) False AMCG00006884
TU141703 other upstream 472891 24032113 ~ 24036112 (+) False AMCG00006878
TU141018 other upstream 3305802 21142865 ~ 21203201 (+) True G112600
TU140974 other upstream 3459965 21048336 ~ 21049038 (+) True G112567
TU140941 other upstream 3570833 20937497 ~ 20938170 (+) False AMCG00006811
TU141973 other downstream 1030948 25618067 ~ 25618445 (+) True G113369
TU142014 other downstream 1227936 25815055 ~ 25832942 (+) True G113400

Expression Profile