RNA id: AMCG00006899


Basic Information

Item Value
RNA id AMCG00006899
length 624
RNA type mRNA
GC content 0.62
exon number 5
gene id AMCG00006899
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 25040592 ~ 25041958 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCTTGCACTGTGATACAGTATGTGTCGATCATCCATCAGGAGGCTGTGCCACACAGCAGCTGCTTGGGAGGGTACGGCCTGCGCAGGAGGGTGCCAGTGGACTACACCGAGGCTCCCGACCTGAAGGACGAGGACTTCCTAGCAGCTGTGTGCTGTGAGCTCTACAGCCCGTCTCACACAGAGGAGCAGCCGGCTGGCAGGGCCTGTGACCCGTGTCCCCAGGCTGACCCtgctctgtccctgtgtctctgccAGTCTGCGACGAGTGCCAGAACTAGTTCCTTGCTGAGTGTCAACAGCCGGCCCAGCTTTGTGGCTGACACCCCCGCCGCGCTGGGCTCGAAGCACAGGGCTCAGCTCACTCTGCCCCCGGTCTTGACCATGCGGGAGTCTGGCATCCCTGGCGCGGACCAGGGGGGTTTTCAATTTTTCGCCCTCATCCCCATAGGGGTTCATAATGGGCCGTACAAGGGCCAGGTGCTCAGCAAGGAGGAGGGCAACCTGGTGGGATTTCAGTACCGCGGGCAGCTCATCAGCCCAGGCTCGGAGCTGCTGGTGTGGTATGGGGAGGAGTATGCCAGGGTGCAAGGCATCACCTGGGACTACCTGTGGGACAACAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141872 lncRNA upstream 364016 24673625 ~ 24676576 (+) True G113283
TU141814 lncRNA upstream 630288 24410057 ~ 24410304 (+) True G113233
TU141805 lncRNA upstream 667757 24370718 ~ 24372835 (+) True G113224
TU141732 lncRNA upstream 751675 24076753 ~ 24288917 (+) True G113159
TU141921 lncRNA downstream 200607 25242565 ~ 25260402 (+) True G113319
TU141961 lncRNA downstream 349897 25391855 ~ 25395392 (+) True G113357
TU141962 lncRNA downstream 378700 25420658 ~ 25420875 (+) True G113358
TU141976 lncRNA downstream 646777 25688735 ~ 25689111 (+) True G113372
TU141977 lncRNA downstream 655239 25697197 ~ 25697408 (+) True G113373
AMCG00006898 mRNA upstream 4119 25021130 ~ 25036473 (+) True AMCG00006898
AMCG00006894 mRNA upstream 386722 24650660 ~ 24653870 (+) True AMCG00006894
AMCG00006893 mRNA upstream 519887 24510048 ~ 24520705 (+) True AMCG00006893
AMCG00006892 mRNA upstream 538246 24480018 ~ 24502346 (+) True AMCG00006892
AMCG00006888 mRNA upstream 593029 24440431 ~ 24447563 (+) True AMCG00006888
AMCG00006901 mRNA downstream 36429 25078387 ~ 25114339 (+) True AMCG00006901
AMCG00006903 mRNA downstream 114128 25156086 ~ 25214360 (+) True AMCG00006903
AMCG00006905 mRNA downstream 294387 25336345 ~ 25340058 (+) True AMCG00006905
AMCG00006910 mRNA downstream 673869 25715827 ~ 25721613 (+) True AMCG00006910
AMCG00006916 mRNA downstream 768605 25810563 ~ 25822470 (+) True AMCG00006916
TU141848 other upstream 453473 24509003 ~ 24587119 (+) False AMCG00006893
TU141783 other upstream 704676 24304779 ~ 24335916 (+) False AMCG00006884
TU141703 other upstream 1004480 24032113 ~ 24036112 (+) False AMCG00006878
TU141018 other upstream 3837391 21142865 ~ 21203201 (+) True G112600
TU140974 other upstream 3991554 21048336 ~ 21049038 (+) True G112567
TU141973 other downstream 576109 25618067 ~ 25618445 (+) True G113369
TU142014 other downstream 773097 25815055 ~ 25832942 (+) True G113400