RNA id: AMCG00006901


Basic Information

Item Value
RNA id AMCG00006901
length 2253
RNA type mRNA
GC content 0.49
exon number 23
gene id AMCG00006901
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 25078387 ~ 25114339 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTGGCCAATTTGTCGATAGTGGAGAAATACAAGGATGTGGAGCCAGTCATCAAGATTGAGGAGGTGGACGGCCTAGAGCTGGTGAGGAAATTTGCAGAAGAAATGGAGGGCATGTTGGGAAGGAAGATGAAGGCAGTAAAGAGGCTGGTAGAAGCTGCAGAGGATGCTGATCTATACCACGAATTCAATTCGTCGTTGGTTTATGATTATTACAACTCTGTGAAAATTAACGAGAGAGATGAAGCCGGGAACTATGTGGAGCTGGGCAGGGAGTTTGTCCTAGACAACAATGAGCATTTTAATGACCTGCCTGTCAACACCTCCCTGAGTGACATTCAAGTCCCAACCAATGTCTACAACAAAGATCCAGAAATTCTCAATGGGGTCTACATGTCTGAGGCTCTGAATCCTGTCTTTGTGGACAACTTCCAGAGAGACCCTACCCTCACCTGGCAGTACTTTGGCAGTTCCACAGGGTTTTTCAGACTCTACCCagGTATCAAATGGACACCAGATGAGAATGGTGTTATTTCTTTTGACTGCAGGAATCGAAACTGGTACATCCAGGCTGCCACCTCGCCGAAGGACATAGTGATTGTGATAGACATCAGCGGCAGCATGAAGGGTCTAAGGCTGACCATTGCCAAGCACACCATCACCACCATCCTGGACACGCTGGGGGAGAACGACTTTGTCAACATCATTGCGtACAACGATTATGTCCATTACGTGGAGCCGTGCTTCAAAGGGACCCTGGTGCAAGCAGATCTCGACAATCGTGAGCACTTCAAACTGCTGGTGGAGGAGCTTCAAGCCAAGGGGATGGGCAAAGTGAAGAAGGGGATGAAGGAGGCCTTCCGCATCCTGAACCAGTTCAACCAGACAGGCCAAGGGAGCTTGTGTAACCAGGCTATCATGCTTATATCtgatggagcaatggaagactTCAAAACTGTGTTTGAGGATTACAACTGGCCAGATCGAAAGATTCGTGTCTTCACCTACCTAATTGGGCGGGAGGTGACATTTGCTGAAAATGTGAAGTGGATTGCCTGTAATAATAAAGGTTACTACACCCAGATCTCCACCCTGGCCGATGTGCAGGAGAATGTCATGGAGTACCTACATGTCCTGAGTCGGCCCATGGTCATCAACCACGACCATGACATCATCTGGACAGAGGCCTACATGGACAGCGCGCTGTTTGCCTCTCAGGCTCAGAGTTTGCTCCTCATGACCACAGTCGCCATGCCTGTCTTCAGCAAGAAGAATGAAACGGTCAGTAACAACTCCCACTGCCCCCTGCTGTCAGAGAGGTGGGAAGAGCGTTCCCATGGAATCCTCCTGGGGGTTGTGGGTTCTGACGTTCCCCTCCGAGAACTACTAAAACTAGCCCCCCGGTACAAGtacaaagaaggaaagaaactaaagccCAAGCCCAATTATAACAGTGTGGATCTGTCGGAGGTGGAGTGGGAAGACACGGATGAGACCCTGAGAACAGCAATGGTGAGAGGTGAAACTGGAATTCTCTCTATGGATGTGAAAATGACAGTGGAAAAAGGGAAAAGGGTACTGTTCCTGACCAATGACTATTTCTACACAGACATCAATGAGACGCCATTCAGCCTTGGAGTTGTCTTGTCTCAGGGACATGGGGAGTATATCTTCATGGGGAACATCTCTGTGGAGGAAGGTCTTCATGATCTGATGCAGCCGGATCTGACTTTAGCTGATGAGTGgaTCTACTGTGTGACTGACATTGACCCACACCATCGTAAACTCACCCAGCTACAGGCCATCATTCGCTTCCTGACTGGGGAGGAACCAGACCTGGAATGTGATGAGGAACTGGTGCAGGAAGTGCTTTTTGATGCTGTGGTGACTGCCCCTCTGGAAGCATATTGGACAGCCTTGGCACTCAATGAATCAGGCATGGAGGAGGGCATTGAGTCAGCGTTTCTGGGCACCCGCGCTGGGCTGATGCGTATGACCAATTTTGTCGGTCCTGAAAAGAAGCTCAACAGGAAATTCCTGACTAAGTCAGACAAGGAGAGCATATTCACAATGGACCATTTCCCTCTCTGGTACCGCCGTGCTGCTGAGCACACTCCTGGGAGCTTCCTCTATTACATCCCTGAGGAGGACACCAAAGGTACTGTAGCCCTAGTATCCCAGCTCCCAAGAGCTTTCATTCCCAATCCCATCTTCTCCCTCAGATGCTTGCTTCCAGGACATATTCCTGTTTAG

Function

GO: NA

KEGG:

id description
K04861 CACNA2D4; voltage-dependent calcium channel alpha-2/delta-4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141872 lncRNA upstream 401811 24673625 ~ 24676576 (+) True G113283
TU141814 lncRNA upstream 668083 24410057 ~ 24410304 (+) True G113233
TU141805 lncRNA upstream 705552 24370718 ~ 24372835 (+) True G113224
TU141732 lncRNA upstream 789470 24076753 ~ 24288917 (+) True G113159
TU141921 lncRNA downstream 128226 25242565 ~ 25260402 (+) True G113319
TU141961 lncRNA downstream 277516 25391855 ~ 25395392 (+) True G113357
TU141962 lncRNA downstream 306319 25420658 ~ 25420875 (+) True G113358
TU141976 lncRNA downstream 574396 25688735 ~ 25689111 (+) True G113372
TU141977 lncRNA downstream 582858 25697197 ~ 25697408 (+) True G113373
AMCG00006899 mRNA upstream 36429 25040592 ~ 25041958 (+) True AMCG00006899
AMCG00006898 mRNA upstream 41914 25021130 ~ 25036473 (+) True AMCG00006898
AMCG00006894 mRNA upstream 424517 24650660 ~ 24653870 (+) True AMCG00006894
AMCG00006893 mRNA upstream 557682 24510048 ~ 24520705 (+) True AMCG00006893
AMCG00006892 mRNA upstream 576041 24480018 ~ 24502346 (+) True AMCG00006892
AMCG00006903 mRNA downstream 41747 25156086 ~ 25214360 (+) True AMCG00006903
AMCG00006905 mRNA downstream 222006 25336345 ~ 25340058 (+) True AMCG00006905
AMCG00006910 mRNA downstream 601488 25715827 ~ 25721613 (+) True AMCG00006910
AMCG00006916 mRNA downstream 696224 25810563 ~ 25822470 (+) True AMCG00006916
AMCG00006912 mRNA downstream 715135 25829474 ~ 25836610 (+) True AMCG00006912
TU141848 other upstream 491268 24509003 ~ 24587119 (+) False AMCG00006893
TU141783 other upstream 742471 24304779 ~ 24335916 (+) False AMCG00006884
TU141703 other upstream 1042275 24032113 ~ 24036112 (+) False AMCG00006878
TU141018 other upstream 3875186 21142865 ~ 21203201 (+) True G112600
TU140974 other upstream 4029349 21048336 ~ 21049038 (+) True G112567
TU141973 other downstream 503728 25618067 ~ 25618445 (+) True G113369
TU142014 other downstream 700716 25815055 ~ 25832942 (+) True G113400

Expression Profile