RNA id: AMCG00006905


Basic Information

Item Value
RNA id AMCG00006905
length 1788
RNA type mRNA
GC content 0.55
exon number 2
gene id AMCG00006905
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 25336345 ~ 25340058 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTCGGCTTGGCAATGCGTGCGAGCTGAGCGCAAATGCAAAGCGAAACCTCGCTGCTTCACGACTGCGGGAGGAAGCGCCGCTCCGACCGGCCTGGGCTTTTTCTTCTCTATATTACTGGGCTTGTGGAGgtctttttgaaaatgtacgaCCGTTTGGATCCCCGGGGAGAACTAGAAGGGTTATCGCAAGACAAAGTGGGTAGTGCTGTCTGATCGCCGTGCGTTTCCCCCCCCTTTGCCGAGGGGTTGCACTGGAAGTGGCTTTTTTGGCTTTTTCATTTGAATCCTACTGCGCAACCCAGACGGATCACGTGGGACGTGGAGTTGATCGATTTGCACAAATATACATGAAAAGAGAAGCGAGAGAGGTAACTAGAAAGGGACGTTCGCCTGGATTATAAAAGATTGAGACTTCAAAGAAAACGTAGGGTTGGGTTAACCGAAATATATCTTTTTTATGCATGTGTAAAATGGAGACGCACATTTCGTGCCTCTTCCCGGAAATTTTAGCCATGATTTTCAGCTACTTGGATGTAAGGGACAAAGGCAGGGTTGCCCAAGTCTGTACGGCTTGGAGGGACGCTTCTTACCACAAGTCGGTGTGGAGGGGGGTGGAAGCCAAGTTGCATTTGAGGAGGGCCAACCCTTCCCTCTTCCCCAGTCTGCAGGCCAGAGGGATCAGAAGAGTGCAGATCCTCAGCCTGCGGCGCAGCCTGAGCTACGTGATCCAGGGGATGCCAAATATCGAGAGCCTCAACCTCAGCGGCTGCTACAACTTAACAGATAACGGCCTTGGACACGCTTTTGTACAGGAGATCCCGTCCCTGCGGGTCCTCAACCTGAGCCTCTGTAAGCAAATCACGGACTCCAGCCTGGGCAGGATCGCCCAGTATCTCAAGAACCTGGAGGTGTTGGAACTGGGCGGCTGCAGCAATATCACCAACACCGGCTTGCTACTCATCGCCTGGGGTTTGCACAGACTCAAGAGCCTCAACCTCCGCAGCTGCAGGCATGTCTCGGACGTGGGCATCGGCCACTTGGCTGGCATGACCCGGAGCGCGGCGGAGGGCTGCCTCAATCTGGAGTACCTGACCCTGCAAGACTGTCAGAAGTTGACGGACCTGTCCCTCAAGCACATCTCCAAAGGCCTGGCCAAACTCAAAGTGCTCAACCTGAGCTTCTGCGGGGGGATCTCGGATGCGGGCATGATCCATCTGTCCCACATGACCAGCCTCTGGAGCCTTAACCTGAGGTCGTGTGATAACATCAGTGACACTGGGATCATGCATCTGGCCATGGGCTCTCTGAGGCTCTCGGGACTGGACGTGTCCTTCTGCGACAAGATCGGCGACCAAAGCCTGGCATACATCGCCCAAGGTCTGTACCAGCTCAAGTCGCTGTCCCTGTGTTCGTGCCACATCAGTGACGATGGCATCAATAGGATGGTGCGGCAGATGCATGAGCTGAGGACCCTCAACATCGGCCAGTGCGTGCGGATTACAGACAAAGGACTGGAGCTCATTGCAGACCACTTGACTCAGCTCACGGGAATAGACCTCTATGGATGTACAAAAATCACGAAAAGGGGGCTGGAGAGGATCACGCAGCTCCCTTGCCTTAAAGTTTTAAACCTGGGACTGTGGCAGATGACCGAGAGCGAGAAAGTGAGGGCATTGAGCTGCTCCGCGCCGGGAGAGGAGGCGCCGATGGAGGCGGGGGTTTCCTTCACTGCTGAAGAACATAGCCGGCTTCTGCCTCCTGCACTTTCGGGGGAAATGTTTAGATGG

Function

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0019005 SCF ubiquitin ligase complex cellular_component
GO:0004842 ubiquitin-protein transferase activity molecular_function

KEGG:

id description
K10280 FBXL14; F-box and leucine-rich repeat protein 14

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141921 lncRNA upstream 75943 25242565 ~ 25260402 (+) True G113319
TU141872 lncRNA upstream 659769 24673625 ~ 24676576 (+) True G113283
TU141814 lncRNA upstream 926041 24410057 ~ 24410304 (+) True G113233
TU141805 lncRNA upstream 963510 24370718 ~ 24372835 (+) True G113224
TU141732 lncRNA upstream 1047428 24076753 ~ 24288917 (+) True G113159
TU141961 lncRNA downstream 51797 25391855 ~ 25395392 (+) True G113357
TU141962 lncRNA downstream 80600 25420658 ~ 25420875 (+) True G113358
TU141976 lncRNA downstream 348677 25688735 ~ 25689111 (+) True G113372
TU141977 lncRNA downstream 357139 25697197 ~ 25697408 (+) True G113373
TU141987 lncRNA downstream 382823 25722881 ~ 25724671 (+) True G113383
AMCG00006903 mRNA upstream 121985 25156086 ~ 25214360 (+) True AMCG00006903
AMCG00006901 mRNA upstream 222006 25078387 ~ 25114339 (+) True AMCG00006901
AMCG00006899 mRNA upstream 294387 25040592 ~ 25041958 (+) True AMCG00006899
AMCG00006898 mRNA upstream 299872 25021130 ~ 25036473 (+) True AMCG00006898
AMCG00006894 mRNA upstream 682475 24650660 ~ 24653870 (+) True AMCG00006894
AMCG00006910 mRNA downstream 375769 25715827 ~ 25721613 (+) True AMCG00006910
AMCG00006916 mRNA downstream 470505 25810563 ~ 25822470 (+) True AMCG00006916
AMCG00006912 mRNA downstream 489416 25829474 ~ 25836610 (+) True AMCG00006912
AMCG00006911 mRNA downstream 511347 25851405 ~ 25861865 (+) True AMCG00006911
AMCG00006917 mRNA downstream 572297 25912355 ~ 25937570 (+) True AMCG00006917
TU141848 other upstream 749226 24509003 ~ 24587119 (+) False AMCG00006893
TU141783 other upstream 1000429 24304779 ~ 24335916 (+) False AMCG00006884
TU141703 other upstream 1300233 24032113 ~ 24036112 (+) False AMCG00006878
TU141018 other upstream 4133144 21142865 ~ 21203201 (+) True G112600
TU140974 other upstream 4287307 21048336 ~ 21049038 (+) True G112567
TU141973 other downstream 278009 25618067 ~ 25618445 (+) True G113369
TU142014 other downstream 474997 25815055 ~ 25832942 (+) True G113400

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00055329 True 2325 mRNA 0.50 1 NC_007115.7 8609517 ~ 8611841 (-)
grasscarp (Ctenopharyngodon idella) CI01000066_00597946_00601637.mRNA True 1858 mRNA 0.52 5 CI01000066 597710 ~ 601637 (-)