RNA id: AMCG00006906


Basic Information

Item Value
RNA id AMCG00006906
length 693
RNA type mRNA
GC content 0.59
exon number 3
gene id AMCG00006906
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 25309625 ~ 25313441 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAGAATCCGTTCAAGTGCCGGACATTGGTTCAAGGGGACATGGAAATCAGGATGATTCAGGGACAGTGTGCCCGGGCTGGGATACATTTGCTGCTGGCAGTGGCCCTGCTCACCTTCAGCTCGCCCTTCCTGGTGGATGCAAACTCGTGGTGGTCTTTAGCAATGAACCCTATTCAGAGACCGGAGATGTACATCATAGGAGCTCAGCCTCTGTGCAGTCAATTGACTGGGCTTTCTCAGGGACAAAGGAAGTTGTGTCAACTTTACAAGGACCATATGGTTTACATAGGCGACGGAGCGAAGACGGGCATCAAGGAATGCCAGTACCAGTTCCGACAGCGGAGGTGGAACTGCAGCACCGTGGACAACACGTCCGTCTTTGGCCCGGTAATACAGATAGGGAGCAGGGAGACGGCGTTCACCTATGCCATCAGCGCGGCGGGGGTGGTGAACGCCATCAGCCGGGCCTGCCGCGAAGGGGAGCTCTCCACCTGCGGGTGCAGCCGGGCCGGGCGGCCCAAGGACCTGCCCCGCGACTGGCTGTGGGGGGGCTGCGGAGACAACGCTGAGTACGGCTACCGCTTCGCCAAAGAGTTCGTCGATGCCCGGGAGCGAGAGAAAAACTACCCCAAGGGCTCTGAGGAGCACGCCCGCACCCTCATGAACCTGCAGAACAATGAGGCAGGGAGGCAG

Function

GO:

id name namespace
GO:0009826 unidimensional cell growth biological_process
GO:0002574 thrombocyte differentiation biological_process
GO:0031018 endocrine pancreas development biological_process
GO:0030182 neuron differentiation biological_process
GO:0045165 cell fate commitment biological_process
GO:0051209 release of sequestered calcium ion into cytosol biological_process
GO:0002062 chondrocyte differentiation biological_process
GO:0001525 angiogenesis biological_process
GO:0010172 embryonic body morphogenesis biological_process
GO:0048840 otolith development biological_process
GO:0048884 neuromast development biological_process
GO:0031101 fin regeneration biological_process
GO:0008591 regulation of Wnt signaling pathway, calcium modulating pathway biological_process
GO:0061053 somite development biological_process
GO:0060028 convergent extension involved in axis elongation biological_process
GO:0060030 dorsal convergence biological_process
GO:0005615 extracellular space cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005109 frizzled binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141891 lncRNA downstream 636127 24671788 ~ 24673498 (-) True G113301
TU141806 lncRNA downstream 933696 24373692 ~ 24375929 (-) True G113225
TU141789 lncRNA downstream 973711 24331087 ~ 24335914 (-) True G113212
TU141786 lncRNA downstream 987763 24315732 ~ 24321862 (-) True G113209
TU141622 lncRNA downstream 1740351 23568155 ~ 23569274 (-) False AMCG00006866
TU141978 lncRNA upstream 78355 25391796 ~ 25392318 (-) True G113374
TU141979 lncRNA upstream 82095 25395536 ~ 25398698 (-) True G113375
TU141993 lncRNA upstream 403084 25716525 ~ 25716987 (-) True G113389
TU141994 lncRNA upstream 404976 25718417 ~ 25718792 (-) True G113390
TU141995 lncRNA upstream 405921 25719362 ~ 25719575 (-) True G113391
AMCG00006904 mRNA downstream 51058 25242554 ~ 25258567 (-) True AMCG00006904
AMCG00006902 mRNA downstream 164284 25131812 ~ 25145341 (-) True AMCG00006902
AMCG00006900 mRNA downstream 340152 24962174 ~ 24969473 (-) True AMCG00006900
AMCG00006897 mRNA downstream 503733 24784598 ~ 24805892 (-) True AMCG00006897
AMCG00006896 mRNA downstream 553804 24726492 ~ 24755821 (-) True AMCG00006896
AMCG00006907 mRNA upstream 87269 25400710 ~ 25448412 (-) True AMCG00006907
AMCG00006908 mRNA upstream 203134 25516575 ~ 25518323 (-) True AMCG00006908
AMCG00006909 mRNA upstream 231872 25545313 ~ 25671743 (-) True AMCG00006909
AMCG00006913 mRNA upstream 411798 25725239 ~ 25735881 (-) True AMCG00006913
AMCG00006914 mRNA upstream 433695 25747136 ~ 25778618 (-) True AMCG00006914
TU141596 other downstream 1902418 23404175 ~ 23407207 (-) True G113050
TU140946 other downstream 4359789 20854057 ~ 20949836 (-) False AMCG00006813
TU140776 other downstream 5073419 20235856 ~ 20236206 (-) True G112420
TU140642 other downstream 5673700 19633237 ~ 19635925 (-) False AMCG00006774
TU140430 other downstream 6968415 18339270 ~ 18341210 (-) False AMCG00006754
TU142176 other upstream 1186574 26500015 ~ 26500681 (-) True G113530
TU142323 other upstream 2089159 27402600 ~ 27527348 (-) True G113645
TU142485 other upstream 2953821 28267262 ~ 28292598 (-) False G113775
TU142484 other upstream 2978014 28291455 ~ 28292598 (-) True G113775
TU142549 other upstream 3397778 28711219 ~ 28812548 (-) True G113833

Expression Profile