RNA id: AMCG00006908


Basic Information

Item Value
RNA id AMCG00006908
length 240
RNA type mRNA
GC content 0.55
exon number 2
gene id AMCG00006908
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 25516575 ~ 25518323 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTCAAAGTGACCAAACAATCTCATACCAAAGGATACAACCACTTTCGGTACACACAGAGGGTGGAAGAGAAGATGGAGGAGCTCATGGCAGCCATGGAGAAGGTGAAGCAGGAGTTGGAGTCCATGAAGGCCAAGCTGTCGTCCACGCAGCAGTCCCTGGCAGAGAAGGAGGCCCACCTGACGACTCTGCGGGCCGAGCGCAGGAAGCACCTGGAGGAGGTTCTGGAGATGAAGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141979 lncRNA downstream 117877 25395536 ~ 25398698 (-) True G113375
TU141978 lncRNA downstream 124257 25391796 ~ 25392318 (-) True G113374
TU141891 lncRNA downstream 843077 24671788 ~ 24673498 (-) True G113301
TU141806 lncRNA downstream 1140646 24373692 ~ 24375929 (-) True G113225
TU141789 lncRNA downstream 1180661 24331087 ~ 24335914 (-) True G113212
TU141993 lncRNA upstream 198202 25716525 ~ 25716987 (-) True G113389
TU141994 lncRNA upstream 200094 25718417 ~ 25718792 (-) True G113390
TU141995 lncRNA upstream 201039 25719362 ~ 25719575 (-) True G113391
TU141998 lncRNA upstream 220231 25738554 ~ 25738867 (-) True G113393
TU142000 lncRNA upstream 222745 25741068 ~ 25745985 (-) True G113395
AMCG00006907 mRNA downstream 68163 25400710 ~ 25448412 (-) True AMCG00006907
AMCG00006906 mRNA downstream 203134 25309625 ~ 25313441 (-) True AMCG00006906
AMCG00006904 mRNA downstream 258008 25242554 ~ 25258567 (-) True AMCG00006904
AMCG00006902 mRNA downstream 371234 25131812 ~ 25145341 (-) True AMCG00006902
AMCG00006900 mRNA downstream 547102 24962174 ~ 24969473 (-) True AMCG00006900
AMCG00006909 mRNA upstream 26990 25545313 ~ 25671743 (-) True AMCG00006909
AMCG00006913 mRNA upstream 206916 25725239 ~ 25735881 (-) True AMCG00006913
AMCG00006914 mRNA upstream 228813 25747136 ~ 25778618 (-) True AMCG00006914
AMCG00006915 mRNA upstream 320432 25838755 ~ 25847485 (-) True AMCG00006915
AMCG00006920 mRNA upstream 369934 25888257 ~ 25893080 (-) True AMCG00006920
TU141596 other downstream 2109368 23404175 ~ 23407207 (-) True G113050
TU140946 other downstream 4566739 20854057 ~ 20949836 (-) False AMCG00006813
TU140776 other downstream 5280369 20235856 ~ 20236206 (-) True G112420
TU140642 other downstream 5880650 19633237 ~ 19635925 (-) False AMCG00006774
TU140430 other downstream 7175365 18339270 ~ 18341210 (-) False AMCG00006754
TU142176 other upstream 981692 26500015 ~ 26500681 (-) True G113530
TU142323 other upstream 1884277 27402600 ~ 27527348 (-) True G113645
TU142485 other upstream 2748939 28267262 ~ 28292598 (-) False G113775
TU142484 other upstream 2773132 28291455 ~ 28292598 (-) True G113775
TU142549 other upstream 3192896 28711219 ~ 28812548 (-) True G113833

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00053420 True 736 mRNA 0.56 5 NC_007115.7 8376362 ~ 8515824 (+)