RNA id: AMCG00006909


Basic Information

Item Value
RNA id AMCG00006909
length 2571
RNA type mRNA
GC content 0.59
exon number 14
gene id AMCG00006909
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 25545313 ~ 25671743 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTACGGCAGTGCCCGCTCGGTTGGGAAGATGGACggcagcagcagtggcagcaGTCAGAGCCCCGGCCGATCGCCCCGTCTACCACGCTCGCCCCGGCTGGGCCACCGGCGGACCAACAGTACGGGAGGCAGCTCGGGCAGTAGTGCAGGCGGAGGCAGCGGGAAGACACTCTCCATGGAGAACATCCAGTCGCTGAACGCTGCCTATGCCACCTCAGGGCCCATGTACCTGAGCGACCACGAGAGCGTGGGGGCCGACCTGCCCAAGAGCACCATGACGCTGGGCCGATCCGGGGGGCGCCTCCCTTATGGGGTGCGTATGACGGCCATGGGTAGCAGCCCTAATATCGCCACCAACAGCGGAGTGGCCAGTGACACCATCGCCTTCGGGGACCACCACCTGCCGGCCGTCAGCATGGCGTCCACTGTGCCACACTCATTGCGCCAGGCGCGGGACAACACCATCATGGACCTGCAAGCCCAGCTCAAGGAAGTACTGCGGGAGAACGAGCTGCTGCGCAAGGAGGTGGACATCAAGGAGAGCAAGCTGAGCTCCTCCATGAACAGCATCAAGACTTTCTGGAGCCCGGAGCTGAAGAAGGAGCGCGCCCTGCGCAAGGACGAGGTCTCCAAGATCGCCGTGTGGAAGGAGCAGTACCGGGTCATCACAGATGAGAGTCAGgattCTAACAGTAAACTGTGTATGCACCTGCAGATGACCATCCAAGCGCTCCAGGATGAGCTGCGCATACAGCGCGACCTCAACCAGCTCTTCCAGCAGGACAGCAGCAGCCGGCCCAGTGAGCCCCTGGCCTCCGAGCTGACGGAGGAGAACTTCCAACGGCTGCATAGCGAGCACGAGCGCCAGGCCAAGGAGCTCTTCCTGCTGCGCAAGACACTGGAGGAGATGGAGCTGCGCATCGACACCCAGAAGCAGACTCTGAGCGCCCGTGACGAGTCCATCAAGAAGCTGCTGGAGATGCTGCAGAGCAAGGGGCTGTCGGCCAAGGCCAGTGAGGAAGACCACGAGCGCACCCGCCGCCTGGCCGAGGCTGAGATGCATGTCCACCACCTGGAGAGCCTGCTAGACCAGAAGGATAAGGAGACTGCGGCCTTGCGGGAGGAGCTTCACCGCCGCTATGAAGGGGCCCCTGAATCTGCCAAGACCAAGGCTCTGCAGACGGTCATTGAGATGAAGGACTCGAAGATCAACTCTCTGGAGCGCGGCCTGCGAGACATGGAGGATGAGATTCAGATGCTAAAGTCCAATGGAGCCCTTAGCACAGAGGAGCGGGAGGAAGAGATGAAACAGATGGAGGTCTACCGCAGCCATTCAAAGTTCATGAAGAATAAGATCGACCAGGTGAAGCAGGAGCTCTCTCGCAAGGATACGGAGCTGATGGGCCTGCAGACAAAGTTGGAGACCCTGACCAACCAGTTCTCTGACAGCAAGCAGCACATCGAGGTCCTGAAGGAGTCCCTCACCGCCAAGGAGCAGAGAGCCGCCATCCTGCAGACTGAGGTTGATGCCCTGCGTCTGCGTCTGGAGGAGAAGGAGACCATGCTGAACAAGAAGACCAAGCAGATCCAGGAGATGGCGGAGGAGAAGGGGACACTCAACGGGGAGATCCATGACCTCAAGGACATGCTGGACGTCAAGGAGCGCAAAGTCAATGTCCTGCAGAAGAAGATTGAAAACCTTCAGGAGCAGCTGCGGGACAAGGAGAAGCAGATGAGCAGCCTCAAGGAGCGGGTGAAGTCCCTGCAGGCCGACACCTCCAACACTGACACAGCCCTCACCACACTGGAGGAGGCCCTGGCAGAGAAGGAGCGCATCATCGAGCGTCTGAAGGACCAGCGAGACCGAGACGAGCGTGAGAAGACGGAGGAGCTCGACAGCAACAAGAAGGAGCTGAAGGAGCTGAAGGAGAAGCTCAGCCTGCTGCAGGGAGATCTGTCTGATAGGGAGACATCTCTGTTGGACCTGAAGGAACACGCGTCCTCCCTGGCTTCCTCTGGTCTGAAGAAAGACTCTAAGCTGAAGAGTCTGGAGATTGCCCTGGAGCAGAAGAAGGAAGAGTGCatcaaaatggaaaaccaaCTCAAGAAGGCCCAGGATGCGGCCATGGAGGCGAGGGCAAGCACAGAACTGACGGAGCGCATCCAGACTCTAGAGAAGGAAGTGGGGCGGCACCGTGAGGACGCCACCAAGGCCCAGGCCGAGGTGGACCGCCTGCTGGAGATCCTGCGTGAGATGGAGAATGAGAAGAATGACAAGGACAAGAAAATCGCGGAGCTGGAGAGAAAGCCGGCCTCTCTCTCCGCTcggcagcaggagcagcagcaagTGTCAGTCCCTGTGCCACAGCACATGGGGGGGTTTGTGTGGGACCTCTTGGgaaaACAAATGAAGGACCAGACCAAGAAGGTGGCCAACCTGAAGCACAAGGAGCAggtggagaagaagaagaatgctCAGCTGATGGAAGAGGCTCGCAAAAGAGAGGACAACATAAGTGAGAATTCCCAGCAGCTCCAGctgGGGAAAGCTGTGACTTTCATGCAATGA

Function

GO: NA

KEGG:

id description
K16072 ERC1, CAST2, ELKS; ELKS/RAB6-interacting/CAST family member 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141979 lncRNA downstream 146615 25395536 ~ 25398698 (-) True G113375
TU141978 lncRNA downstream 152995 25391796 ~ 25392318 (-) True G113374
TU141891 lncRNA downstream 871815 24671788 ~ 24673498 (-) True G113301
TU141806 lncRNA downstream 1169384 24373692 ~ 24375929 (-) True G113225
TU141789 lncRNA downstream 1209399 24331087 ~ 24335914 (-) True G113212
TU141993 lncRNA upstream 44782 25716525 ~ 25716987 (-) True G113389
TU141994 lncRNA upstream 46674 25718417 ~ 25718792 (-) True G113390
TU141995 lncRNA upstream 47619 25719362 ~ 25719575 (-) True G113391
TU141998 lncRNA upstream 66811 25738554 ~ 25738867 (-) True G113393
TU142000 lncRNA upstream 69325 25741068 ~ 25745985 (-) True G113395
AMCG00006908 mRNA downstream 26990 25516575 ~ 25518323 (-) True AMCG00006908
AMCG00006907 mRNA downstream 96901 25400710 ~ 25448412 (-) True AMCG00006907
AMCG00006906 mRNA downstream 231872 25309625 ~ 25313441 (-) True AMCG00006906
AMCG00006904 mRNA downstream 286746 25242554 ~ 25258567 (-) True AMCG00006904
AMCG00006902 mRNA downstream 399972 25131812 ~ 25145341 (-) True AMCG00006902
AMCG00006913 mRNA upstream 53496 25725239 ~ 25735881 (-) True AMCG00006913
AMCG00006914 mRNA upstream 75393 25747136 ~ 25778618 (-) True AMCG00006914
AMCG00006915 mRNA upstream 167012 25838755 ~ 25847485 (-) True AMCG00006915
AMCG00006920 mRNA upstream 216514 25888257 ~ 25893080 (-) True AMCG00006920
AMCG00006919 mRNA upstream 227808 25899551 ~ 25911582 (-) True AMCG00006919
TU141596 other downstream 2138106 23404175 ~ 23407207 (-) True G113050
TU140946 other downstream 4595477 20854057 ~ 20949836 (-) False AMCG00006813
TU140776 other downstream 5309107 20235856 ~ 20236206 (-) True G112420
TU140642 other downstream 5909388 19633237 ~ 19635925 (-) False AMCG00006774
TU140430 other downstream 7204103 18339270 ~ 18341210 (-) False AMCG00006754
TU142176 other upstream 828272 26500015 ~ 26500681 (-) True G113530
TU142323 other upstream 1730857 27402600 ~ 27527348 (-) True G113645
TU142485 other upstream 2595519 28267262 ~ 28292598 (-) False G113775
TU142484 other upstream 2619712 28291455 ~ 28292598 (-) True G113775
TU142549 other upstream 3039476 28711219 ~ 28812548 (-) True G113833

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00053417 False 3749 mRNA 0.54 18 NC_007115.7 8213063 ~ 8515824 (+)
grasscarp (Ctenopharyngodon idella) TU500013 False 2336 lncRNA 0.42 7 CI01000306 9704707 ~ 9717614 (+)
rainbow trout (Oncorhynchus mykiss) TU500013 True 361 lncRNA 0.37 1 NC_048569.1 77169450 ~ 77169810 (-)