RNA id: AMCG00006912


Basic Information

Item Value
RNA id AMCG00006912
length 1920
RNA type mRNA
GC content 0.43
exon number 7
gene id AMCG00006912
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 25829474 ~ 25836610 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cttttgatttccaGGTTGGATTGTCTGATTAAAACTGTTCGGTCTGAAGGCTATTTTGGAATGTATCGAGGTGCTGCAGTTAACCTTACTTTAGTGACCCCAGAAAAAGCTATCAAGCTAGCTGCCAATGATGTCTTCAGACAACAGCTCTCCAAGGATGGCAAAGGCCTCACACTATACAAGGAGATGTTAGCAGGTTGTGGAGCTGGTACCTGCCAGGTCATTGTGACTACACCCATGGAAATGCTCAAAATCCAGCTCCAGGATGCAGGGAGACTTGCTGCCCAGAGGCCTGTGCCGGCTGAAAGTATTGCCACTTCCCTGCAGGCTCCCCAGCCCACTGGCAGCCCCCCCCCTGCTCCCCAGCGCCCTTCCGCCACCCAAATCACCAAACAGCTGCTGCGGACCTGCGGGGTGGCCGGTCTCTACAGGGGAATGGGTGCCACCCTGTTCAGGGATGTTCCCTTCTCCATGATCTATTTCCCCCTGTTTGCCAATCTCAATGACCTGGGCCACAGCACCCCCGAGGAGAAGGCCCCCTTTGTACACTCCTTCGCGTCGGGCTGTGCCGCCGGCTCCGTGGCAGCGGTGGCAGTCACCCCTCTCGATGTTATCAAGACTCGTTTACAAACCCTGAGAAAAGGTGTCGGGGAAGACACGTACAGTGGCATCATTCACTGCACCAGGAGGATCTGGTCCAGGGAAGGGCCGTCTGCCTTTATGAAGGGCGCCGTCTGTCGCGCTCTGGTCATAGCCCCTCTGTTTGGGATCGCTCAGGGGGTGTACTTCCTCGGAGTCGGGGAGCGCATCCTGGAGGTTTTCGGTTAGATACAGCCCAGGAGCTCAATACTGCAGTCGAGGGCTCCTTATATTTATAGCTCTTACCGTTTATACACTTCAGATGTTCAAAGTTGCGGTGCTTAACAAGACTTGAGTATCTGACTTAATAAGGGTTGTCCATTAATGGTGTCATGCACAGTCATCTACAAAGAGGGGAAAGGGATGTGATGTGTGATATCATGaggcaatttaaaataataataataataataataatgtgcttttatttgctCAAACTGATAGGTCTATATGTTTCACACATCTTGTTAGACTGACATTCCAGCCTAATgcttttataattgtttaatatttttataagaCAAGTTTATGTTAAACTAATGTgatttgttgcatttgttttaatctgatcACCGAAAACGGAATATTATTAGTTTTGCATTACATAACAATTCTGTAACCTCAGTATCCCATCgaaaacacacatgaaacatAACTACTTTgatgggagggggtggggtttaAACACTACAATTTTGCATGACACCATTAATGGATCGTCTCGCAGACAATACAGTTACTTTTCAGTGTCCTATTTTCTGGACAATGctgatatattttgtgaaagCTTAAATTAAGACAAAAAGTTTACTTACAGTGTAAAAATATTTCCCCCTTCAAAATAAGGTTTtcttaaataagtaaatacagcACTATAAATGACGTGGATTGATCAGGAGAttccttgtttttgtaaaaCTTTTGGAATactgtacaaacaaaataagtgtaacagCACCTACTAAGCTTCATTATTAAGCAAGATGTTTATTTAAccaattataaaaatgattttcatattttaatcttcTGAACAGCTTTTATAGTCTCCAATAATATTCATCTCAGTTCTGAATGCTGAATGTCAATAACATCGAGTCTGTTGTCAGTTAATACTTTGCTTTGTTCAAACCTGAGATTTTCTCTATGATTTGTACATAGCTTCCCCCTGTCTTTTGCAAATTCCTTTTTTGCTGCTGCcatggaaataaatcaaatgttctTATAAGCAGTGACAgtgtaattgtctttttttaactgCTGAATTAAATTAGTGTGagg

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141999 lncRNA upstream 83615 25740983 ~ 25745859 (+) True G113394
TU141987 lncRNA upstream 104803 25722881 ~ 25724671 (+) True G113383
TU141977 lncRNA upstream 132066 25697197 ~ 25697408 (+) True G113373
TU141976 lncRNA upstream 140363 25688735 ~ 25689111 (+) True G113372
TU141962 lncRNA upstream 408599 25420658 ~ 25420875 (+) True G113358
TU142028 lncRNA downstream 56047 25892657 ~ 25894634 (+) True G113409
TU142098 lncRNA downstream 159034 25995644 ~ 25995909 (+) True G113467
TU142100 lncRNA downstream 159437 25996047 ~ 25996264 (+) True G113469
TU142180 lncRNA downstream 718077 26554687 ~ 26554909 (+) True G113534
TU142183 lncRNA downstream 771049 26607659 ~ 26640179 (+) True G113537
AMCG00006916 mRNA upstream 7004 25810563 ~ 25822470 (+) True AMCG00006916
AMCG00006910 mRNA upstream 107861 25715827 ~ 25721613 (+) True AMCG00006910
AMCG00006905 mRNA upstream 489416 25336345 ~ 25340058 (+) True AMCG00006905
AMCG00006903 mRNA upstream 615114 25156086 ~ 25214360 (+) True AMCG00006903
AMCG00006901 mRNA upstream 715135 25078387 ~ 25114339 (+) True AMCG00006901
AMCG00006911 mRNA downstream 14795 25851405 ~ 25861865 (+) True AMCG00006911
AMCG00006917 mRNA downstream 75745 25912355 ~ 25937570 (+) True AMCG00006917
AMCG00006921 mRNA downstream 113076 25949686 ~ 25972112 (+) True AMCG00006921
AMCG00006927 mRNA downstream 359707 26196317 ~ 26203741 (+) True AMCG00006927
AMCG00006928 mRNA downstream 398242 26234852 ~ 26260252 (+) True AMCG00006928
TU141973 other upstream 211029 25618067 ~ 25618445 (+) True G113369
TU141848 other upstream 1242355 24509003 ~ 24587119 (+) False AMCG00006893
TU141783 other upstream 1493558 24304779 ~ 24335916 (+) False AMCG00006884
TU141703 other upstream 1793362 24032113 ~ 24036112 (+) False AMCG00006878
TU141018 other upstream 4626273 21142865 ~ 21203201 (+) True G112600

Expression Profile