RNA id: AMCG00006914


Basic Information

Item Value
RNA id AMCG00006914
length 4059
RNA type mRNA
GC content 0.57
exon number 16
gene id AMCG00006914
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 25747136 ~ 25778618 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTACCTGCTGACAGACCTCCCTGGCTCCCCTGAGCTGGAGGAAGCCCTGTTCATACAAGACACTGAGTTTTTGGTGGAGCTGATTGCCTCTCTGCTGCAGGGATGCTACCAACGTACAGACATAACGCCCCAGGCGTTCCGACGGTACCTGGAGGACATCATCAATTACCGCTGGGAACTGGAGGAGGGGAAGCCCAACCCCCTGAAGGAGGGGGCGTTCGAGGAGCTGCCCGCCCGCACGCAGGTGGAGCTGCTGCACAGGCTGTGCGACTACAGGCTCGACGCTGCGGACGTCTTCGACCTCCTCAAGGGTTTGGATGCTGATAGCTTGCGGGTTGACCCTTTGGGAGAGGACAGTGAGGGCGCCCTCTACTGGTATTTCTATGGAACACGCATGTACAAGGAGCAACCAGTGCAAGTGAAGGCTGTTACACAGAGTGAGTTGGAAAGCATGAAAAAAGAGGAGAATGGATTGGCGGACCCACACACAGGCACTGAGAGCAAACGAGGGGCCTGGTCTCTAGTATGTGCCACCGAAGAGGAGTGGCAGAGCCTGGCTGACAGCATCAAAGGGAAAACCTCCTCCAAAGACCGACAGCTCCACAAGCTGCTTATTGAGAATTTCATCCCCGAGATCAGTAACATGATCATATACAAGGAGAAGCAACGTCAAGAAAAGCTGTTGAACATGGCTCCTCGGAGAAGCTCTGACCGGCTAACAATCAAACGCATCATACAAGAGGAAGAGGAAACGCAGATGGCCATTGCAGAGGTGGAGCAGCAGAAGCGCAGAGAAGAGGAGGATTCGGACCGGCAGTTTGTGCTGGCTGAGCAGCGCAGGGAGTTCGAgaagcagctggaggaggaacGCAGGCGGGAGGAGGAAGACAAGGTCAAAGCTGTGGAAGAGCGGgccaggaggaggaagatgagggaggagaaggCCTGGCTCCTGTCCCAGGGCAAAGACCTTCCCCTAGAGCTGCGCAACCTGGAGCCCCACTCACCTGTCACCAGAACCAGGAAAACCAAAGAATTctaTGAAATAGATGATGATTACACAGCTTTGTACAAAGTTTTAGATGCTTTGAAGGCACACAAAGACTCTTGGCCCTTCATGGAACCTGTCGATGAATCATACGCTCCAAATTATCATGACATCATTGAGACCCCAATGGACCTGTCAACGATTGAGAAGAAGCTTAACGAAGGGCAATATATTGCAAAAGAGGAGTTCATCTCCGACGTGAAGCTCATGTTTGAAAACTGTCAGGAGTACAATGGAGAAGATAGTGagTACACGAAGATGGCGGAGGCTCTAGAGCGCTGTTTTAACAAGGCCCTGCTCAAGCACTTCCCCCAGGAGGACGGCGACACAGACGAAGAGTTCAAGGTCAGCAGCGAGGACAGGGAGCGCAGGGAAAGGCGCCGGAGCCGAGCACAGCGCCACAGTGGACCGGACGTGCTGGCCAGGGTGGCGGAACAGGCCCACCGCCGACGCACCCCCTTCAATGGGAAGGGCCAAGCACACCCCGAAGAGGAGAAACGGAAACCAGCCCCTCAGCCCCAGCCAACATCCTGGGCTAATGGGCCTCTACCCAGCCAGGGCTTCCCATCTGCACAATACACCTCAGTGGCTGAAAAGAAGTCCCCACTCTACCAGCCACCCCACCCGAGGCTGGGGGAGCCCAACAGACACCACCTACCTCAGCAATTAAACATGCAGCCTTCCCCTGGATTGAATGATCAGCTGGGCCCAAAACTGATGGGACTGGACTGCAAAGCTTCACCAACACTGCCACCTCAACCACAGCATCAGCAGCCACATCCGCCGTACGTGGGCCCCACTCACGGGCCATCTCTGGGGCCAAGGCCTGCGGCACTGCAGTCAGGTGGCCTCTGTGCCCCTCCACCAGAGGGCAGCTTGTACCCTTCTCAGCAGAGACCTGAAGGAGTGGTCAGACACCCAGGCGGGGGGGCAACTTTTGCGGGGCCTGATATCTCCCCACTGTCTGCTCCTCAGAATAACATGTACCCTCACTTCCGGCACCCCAGCGTAGCCCTGCCCCCTATGTGGTCAGGGGTGAATGGCCTTGGGCAGGAGAGACCCTCAGCACCTGGACTCGAGCAGAACCCAAACTGTCTGCCGCTAAGACCTTTCAACCCTGCCACCATCCGTCCCCCACCTCCACCCTCAAAGCAGTGGCCAGACCAGGCGCCCAGTTACTTACCTCACAATGGCCAGCCAGTAGGTCTGTACAGACTGCCCTGTGGTGCCAGCTCCCCGGCACCCAGCGCTCCACGGGGTGATCCTGTTCACCGGCCTCCTGCCCCCACCGTCCCCACCCAGGAACACAGGGCACACCTGGGCTCCATGCTTGATAGCCCCGAAATGATTGCCCTGCAGCAGCTTTCGGCCTCCTCCTGCCCCCTCGGGAGCCCATCCCGCCAGCTCCTCTCTCAGCACCTTGGTAACTTCCAGCAGTCCTCAcgtgcccccccgcccccccagcaCCTGCCAcaaccccctcctcctccagaaATACAGCTGCTGAAGCCCGCCAAAGACAGCAGCGGGGACAGACAGAGCAGCCACACAGAGGACGCTTTCAGGAAAGGAATAACATCTGAGCCAAAAATGGCTGAGCCCATTCAGTCGGCTAGAGTTGCTCCTGTTCCGGGAGAACAAGAGAGGAAATCTGTCCCGAGTCCAACAGAAACTCCCAGCAGACCCTCAGGTGAGGGGATTCAGAGCCCTTCTGCTCCTGACCGGGGGACCTCCCAGGACAAAGGCCTTACAGACCAGACTCCTATGCCCGGACACCCGCAGGGAACAGAAACCTGTGTTAGAGACAGTGAGAAAGCCCCAGAGCAGAGCCCCCAGGATGAAAACCACAAGAACGCAAGTGAGCCAATCTCCAAAACTGAGCTGAGCAAGGAGGTGGAGGCCAAATCGGATCTTAAACCGCTCAATGATGCTGGGATGAGGCCACCTAATGGGCATTTCAAGGAGCAGAGCTTTAATATAGCACAAGAGAATCAACTGAGCAACGTGGGTCATAGAGCAATGGCCACTATGAACCCTACAGCATCTCCTTATGAACTTGTCCAGAAGAATGAGGCCCAGGTCcaatacaacaacacaaatggGCCTAGACACGCCACTTATGCAATGCCCATGGGCAGGCAAATGGTAGTCCATAATAGGCAGCCCTTCTCCAACCAGGCCCTGCCCCAAAACATGCCTCAGCACCGTGGCCCTGTCCGATATCCCCATTTCCACCAGCAAGGGGCAGCGTATCCTTACCCCATGGCTCAAAACCCTCAAGGCAACTCAAACATGTTCCAGCAGTACCAGCAGCCACACTACTATTCCCAGGCTCAAGGTGGCAATGGGGGAGGGGGCTTTCCTGCAGAAGACTGGCAAAGGCCACCCTACCAGCCTCGACACCCCGTGCCATCCAATGCTTACATGCCCATGGCCAGCGCCAATGTCAATGGAAGGCTACGGGAAAGCAGCATGTCACCTCAGGGCTCAGAAAGCTCAACCAGCAGTTTGGTCTCTCCAAACCCAATGTCAGAGGGAACTAGGAGCAGCTCTGCGGAGATCAGGGAGGTAGCTAGTCCAATAAAGCCGGCCAGAATAGAAGAAGATGCAGAGAGGCCCGAGAGCCCCAAGGAGATCCTGGACCTAGACAGTCACAATGCAGTGGCCAGGAGACGCAGTGCCCAGCCCCCTTCCATGACTGGCTTCATGTATGACCCACGCGCAATGCACCCTGGGATGCAGGAGGGGGCCAGTGGTTCTCCATCCCACATGATGGCCCATGCTTCTTATGGTGCCCACCCTTTCACCGCCAATCCGTACCAACCCCAAAGGCCTCCGCATCATTTGATGCAAGCCATGCACCATCCCCAGCATGTAGGCTACCCCCAAGGCCAACCCAGAATGGCCATGTACAGACACCCTGACCCAAGGATGGGCCACTTCCAGGGCATGATGATCCAGCAGAGAGTGCCAGGACCGGTGACAGAGCAGTACCTCCGCCCAGGGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142000 lncRNA downstream 1151 25741068 ~ 25745985 (-) True G113395
TU142003 lncRNA downstream 1646 25741068 ~ 25745490 (-) False G113395
TU141998 lncRNA downstream 8269 25738554 ~ 25738867 (-) True G113393
TU141995 lncRNA downstream 27561 25719362 ~ 25719575 (-) True G113391
TU141994 lncRNA downstream 28344 25718417 ~ 25718792 (-) True G113390
TU142052 lncRNA upstream 87767 25866385 ~ 25867279 (-) True G113431
TU142099 lncRNA upstream 217023 25995641 ~ 25995929 (-) True G113468
TU142110 lncRNA upstream 222828 26001446 ~ 26038323 (-) True G113479
TU142114 lncRNA upstream 222828 26001446 ~ 26010499 (-) False G113479
TU142233 lncRNA upstream 1280751 27059369 ~ 27059594 (-) True G113573
AMCG00006913 mRNA downstream 11255 25725239 ~ 25735881 (-) True AMCG00006913
AMCG00006909 mRNA downstream 75393 25545313 ~ 25671743 (-) True AMCG00006909
AMCG00006908 mRNA downstream 228813 25516575 ~ 25518323 (-) True AMCG00006908
AMCG00006907 mRNA downstream 298724 25400710 ~ 25448412 (-) True AMCG00006907
AMCG00006906 mRNA downstream 433695 25309625 ~ 25313441 (-) True AMCG00006906
AMCG00006915 mRNA upstream 60137 25838755 ~ 25847485 (-) True AMCG00006915
AMCG00006920 mRNA upstream 109639 25888257 ~ 25893080 (-) True AMCG00006920
AMCG00006919 mRNA upstream 120933 25899551 ~ 25911582 (-) True AMCG00006919
AMCG00006918 mRNA upstream 159089 25937707 ~ 25949127 (-) True AMCG00006918
AMCG00006922 mRNA upstream 197872 25976490 ~ 25993105 (-) True AMCG00006922
TU141596 other downstream 2339929 23404175 ~ 23407207 (-) True G113050
TU140946 other downstream 4797300 20854057 ~ 20949836 (-) False AMCG00006813
TU140776 other downstream 5510930 20235856 ~ 20236206 (-) True G112420
TU140642 other downstream 6111211 19633237 ~ 19635925 (-) False AMCG00006774
TU140430 other downstream 7405926 18339270 ~ 18341210 (-) False AMCG00006754
TU142176 other upstream 721397 26500015 ~ 26500681 (-) True G113530
TU142323 other upstream 1623982 27402600 ~ 27527348 (-) True G113645
TU142485 other upstream 2488644 28267262 ~ 28292598 (-) False G113775
TU142484 other upstream 2512837 28291455 ~ 28292598 (-) True G113775
TU142549 other upstream 2932601 28711219 ~ 28812548 (-) True G113833

Expression Profile