RNA id: AMCG00006917


Basic Information

Item Value
RNA id AMCG00006917
length 1416
RNA type mRNA
GC content 0.54
exon number 9
gene id AMCG00006917
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 25912355 ~ 25937570 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTAGAGCAGTCGGATCGGGCTCCGCTGCTTGACTGGGAAGAAACCCCAGCGGCCGAACCGGTTCCAGCTGCTCCGCCGGAGAAGGCTTCGGAACCGAGCCCAGTCAGCTGCCGGGCGCTGGGCAGCACTGCGCCGGGCACAGGCTGGAGTACGAGCCCCGGAGGTCCGACAGCCTTACCCGCGGTTGTAGCAGCTGTTAGCGGGGAAGCAGACTGCCAAGTAGGTGCGGTTCAGACGGGGCCGTACCGGGATGCACCGAGTCCGGTTAAAGGGAACTCCAATTTCTCCAGCTGGGATAGCGATTTCCCAGTAAAGAAGCAAAGGGCAACAGATTGGGAAGAAAAGGACCAAATCGTGTCTGTTTTCGTGGTGACCTTTGATACCCGATCAGCAATAGAGAAGACTCTGAAAGGATATTTTCGCAAAGGCAGCTACTTTGGTCTGGCCTGCTTTGCCAATATGCCAGTGGAGAGTGAGCTGGAGAGGGGTGCCCGCATGAAGTCTGTGGGTATCCTGTCACCTTCTTACACTCTGCTCTACAGATACATGCATTTCCTGGAGAACCAAGTCAGGCATCAGTTAGAGGTACCGGGGCACTACTCTCAGTTAGAAGCTTTTTAcgaagacaagaaggcagtgTTGGCAGTTGGCAATGGAGCAGCTACCTCCCACCAGCCAGGGCCCTGGATTCCCACAATCAACAGGTGTATGCACCCAGAGATGAAGATAACGCACCCAGCCGGCTGCATGTCCCAGTTTATCAAATTCTTTGGGGAACAAATCATAATCCTGTGGAAGTTTGCATTGCTGCGGAAACGAATACTCAtcttctctcctccccctgTGGGTGTGGTCTGCTACAGAGtgtactgctgctgctgcctggcGAACGTTTCCCTCCTTGGGgttggcatgtctgtgccaGAGTTCAGACCTTTCTTCTACATCAATGTGGCTGACATTGAAGCCCTGGAGACAGAGCTGTCATATGTTGCCTGTACGACAGAAAAAATCTTTGAAGAGAAAAAGGACCTGTATGATGTATACGTGGACAATCAGAATGTAAAGACGCACCACGAGAACCTGCAGCCACTGCTGAGGATAAACAGTGCGGACAGGGACAAGTACAGGAAACTCAGCGAGCAGAGACAGATGCTGCTGTACTCTCAGGAGGTGGATGAGGACTGCTCTTCCAGTGAAGAAGACCTTTTCATCCTGTTTTTCATGGAGCAGAACAACCGGATCTTCCAGACATTGTGGGAGGTGTCTAGCAGCCAGGATAAGACCTTGACAGAGGAGCACGTCCGGAGCATGGGGCTGGACCCCCAGGGAGACCGCAGCTTCCTCATCGACCTGCTGGAAGTGTACGGCATCGACGTGATGCTGGTCATAGACAACCCCTGTTGCCCCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142028 lncRNA upstream 17721 25892657 ~ 25894634 (+) True G113409
TU141999 lncRNA upstream 166496 25740983 ~ 25745859 (+) True G113394
TU141987 lncRNA upstream 187684 25722881 ~ 25724671 (+) True G113383
TU141977 lncRNA upstream 214947 25697197 ~ 25697408 (+) True G113373
TU141976 lncRNA upstream 223244 25688735 ~ 25689111 (+) True G113372
TU142098 lncRNA downstream 58074 25995644 ~ 25995909 (+) True G113467
TU142100 lncRNA downstream 58477 25996047 ~ 25996264 (+) True G113469
TU142180 lncRNA downstream 617117 26554687 ~ 26554909 (+) True G113534
TU142183 lncRNA downstream 670089 26607659 ~ 26640179 (+) True G113537
TU142196 lncRNA downstream 707186 26644756 ~ 26645011 (+) True G113541
AMCG00006911 mRNA upstream 50490 25851405 ~ 25861865 (+) True AMCG00006911
AMCG00006912 mRNA upstream 75745 25829474 ~ 25836610 (+) True AMCG00006912
AMCG00006916 mRNA upstream 89885 25810563 ~ 25822470 (+) True AMCG00006916
AMCG00006910 mRNA upstream 190742 25715827 ~ 25721613 (+) True AMCG00006910
AMCG00006905 mRNA upstream 572297 25336345 ~ 25340058 (+) True AMCG00006905
AMCG00006921 mRNA downstream 12116 25949686 ~ 25972112 (+) True AMCG00006921
AMCG00006927 mRNA downstream 258747 26196317 ~ 26203741 (+) True AMCG00006927
AMCG00006928 mRNA downstream 297282 26234852 ~ 26260252 (+) True AMCG00006928
AMCG00006930 mRNA downstream 767210 26704780 ~ 26706164 (+) True AMCG00006930
AMCG00006931 mRNA downstream 832956 26770526 ~ 26770852 (+) True AMCG00006931
TU142014 other upstream 79413 25815055 ~ 25832942 (+) True G113400
TU141973 other upstream 293910 25618067 ~ 25618445 (+) True G113369
TU141848 other upstream 1325236 24509003 ~ 24587119 (+) False AMCG00006893
TU141783 other upstream 1576439 24304779 ~ 24335916 (+) False AMCG00006884
TU141703 other upstream 1876243 24032113 ~ 24036112 (+) False AMCG00006878

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000013_03885988_03895027.mRNA True 1722 mRNA 0.52 11 CI01000013 3885988 ~ 3895027 (+)