RNA id: AMCG00006918


Basic Information

Item Value
RNA id AMCG00006918
length 5060
RNA type mRNA
GC content 0.39
exon number 16
gene id AMCG00006918
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 25937707 ~ 25949127 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGATTTACGGATTTCTTTAGGGTGTGGACAGTGTTGTCTCTCCATGGCCCGAGTGCTGAAAGTCCTGCAGACCCTCAGGAATCACTGGAAGAAGTCTTTATTCGGAGCCAGCGTCGTCTCCTATGGAGGACACTTGCTCTATGGAAAGCATTGTGACAACCTATTGCGGAGGGCAGCTTGTCATGAAGCTAGGgaGTTTGGCAGGCAGGTGATACCAGCACACATGCTGGTCAAAAAGGCCACAGTGATTCTCAACCCAGCTGCTTGTAATAGAAAGGCTGCCAACCTGTTTGAGAAAAATGCCGCACCCATATTGCACCTGGGTGGTTATGAAGTGACGTTGGTGAAGACAGATTATGAGGGCCAAGCGAAGAAGCTGCTTGACCTGATGGAACCGACCGACCTCCTGATTGTGGCCGGAGGAGATGGCACCCTGCAGGAGGTAGTAACTGGACTGCTGCGAAGACCCGATCAGgcaTCCATCAGTAAGACTCCCATTGGTTTCATACCCCTGGGCTCCCAAAATTCCCTGAGTCAAACTCTGCATTCTCCCAGTGACAACAGGGTGAAACACATCACAGATGCCACGCTCTCTATCCTGAAGGGAGACACAGTCCCTCTCGACGTGCTGCAGATAAAGGGGGAGAAAGACCAGCCAGTGTTTGCCTTGACTGCGTTACGATGGGGCGCGTACCGAGACGTAGCAGCCAATGTTAGCAAGTATTGGTACCTTGGACctttaaaatcaaaagcagCTCATTTGTTCAGTACATTAAAGGAGTGGCCACAGAGCCATAAAGCCTCCTTGACATACCAGGGCCCTACACCGCGACCCCCAGATCTCACTGAGaagcccccccgccccccactcCTCACCCGGATTATCAACAGGCTGTCACTCTACTGGGCACCTCCAGAACAAGAAGTTCCACAAGAACCAGAGCCTTTGGAAGAGGTGGAAGTGTCAGCGCGCACAGAAGATGCCCTGACGGTCTGTGTGGAACCTGACACTCTCAGTAAAGGAGATTTTATTTCTACTGGGAGCATAAAGATGAAGGATCCGTCCATGTGTCCAGAGAGTGCACTTCAGCTGATGGCCAGTCGCTTGCACCTCAGTCTGCCACAGGAGGGAGCCGGTTTCTATAACATTGACAACGAGGCATACGAGGCCATGCCAGTGGAGGTCATGCTGTTACCACGGAAACTCCACTTCTTCTGCAACCCAGCTCGCAAACAGGAGCTGCTGAGTGAGGCCcagtgatggagagagagagagagggcggcCGACACAGGACTGGCGTAACAGTAATGCTGCCTTACCCGGAGAAGAGAGTTTGGTCTTCATAGTCAAAAGGCCAATTCAAGTAGCATTGATGGCTTCCAATGGTTCCAGTTGGCCAGGCCTCTTGCTGAATAAGTATTTCATGAAGATATTGAAACCTGGCAGAGCAAACAAACGgaaaaaaccaacaaaatagCTATACataatacttttaatttcaTAGCTCGTCGAACTGAAGATCTCTCTTCAAACACAACAGGGTGTTGTTCAATGAGGACAGGGCGAAGCTTTGATTTGCCATGAATCTCATCTCGGAGCAGAGAGTCTTACTGGAGTGTTCTGACAATGGAAGCTCACCACACAGTGCATCAGCTGAAAACAAAGAAGCCTACTTCACCACTGAAATGGAGCAAAATACTTCTCTAgtaataatttagaaaaatatccAAGTTTATTGAGCCtttattcaaaaacattaaatgtatggGAAGCATCTATtgacttttccatttgtttcatAGCTTATACATGTCTAAGAAATGTCCCATAGTTTCACCTCTACGTGTGTAGTACAAATCTGTCAGATCTAATTAAGAAAGGAAAAGGGCACCATTCGACATTCTAgaatttacaatttacttttttgAATGAAACTAACATGATGCATGATTTGTTATCCTTTCTctctgaattaaatatatttaaaatgtgtagttgaatgtgatttaatttatgtGTTCAATAAAGAGtaatttgcttgttttgaaagcatctCTGGAAGGGAGGGCAGTTGGCCACTGATCATCAGTTGAAtagtgaattatttaaatagattaCAGCTGCTCGATTTGATCACAAATTCAAAGATTTGGTATTTCATTAAAGACGAGCCTTGGTTTTCATTCTAAATGTTAAagacacaaactgacacacaccaTAACTGAGGACTCTGAATATAGTATTCATAgagtaaaaatatattacagcagtattttgatttagaaaagaaaaaaggtttttatttatttttttacatcagtaaataaaacatacgTTCACTGCTTGGAGAAAAAATCCAGGCAGTTACTCTTTATCATTCTATTTGGTGGCtcagtttgttttaacttttgatctccctaataataataataataataaataaagttcaGTCCCTTCTTATTTTAAAGCTATTGTATTAAAACTGTAGGGGTTAATATATGGGGTTTGTGGTACATCTGGTATCGGTAAGCATGCACAGTGCAGGTATTGAGGGATTTTTCTTGTAACTTTAAGCGAATACTAGGCATGTTATATCACACTGTCAGATAATTTGGTGGGTTAGGTGCAGTGGTAGCCTTATAATCATTCATCTATACTGCAGTTAAAATATCCATCTAGTAATGGcatgcaaaatgtgtttattaatagcTCTGTAAATAAAAAGGGACCAACTTTGTAATCATTTGATAGTAAGtacaatgtgaaatattgtCCGGCTAATGAAAGGCAAATAATACATCACTTTTGAATGGTTACATTCCCTTTTAAGTACAGTAGTATCAAATACAGTTGTAGTACAGAGACAgatacagcaaacaaacaaaaaaacgaagCCAACAGACTGGTCAGACACTTGGTATGTTTCCTATTTACTGTTTGCCTCGCAATACATTTTGGTGtagacaattaaaatgaattacattaatttaaagtaaataaatagaattattgcttaacagaaaatatacagtccttgactattaaaaatgttaaaataaatacaaactcttTTTCCTGCTAAGCAAATCACTCCCCCAAAGGCAgactattttttttcccaaatggaAACTCACAGGGAGAACTACTTGACAGCACTTTCTGGGTACCTGATTCAATTACTGTGGGTGGCGGTTCCACATCTCTGTGGCTGCTCTGCAGCTGGTCTTGACTATGCAAGATACTTTATGAGGATAGCTAACCGGGATGGTgttgcatttcaatatatttaatatgcagACTTCAGTTTTCAATGGTTTAATCTGACTACATCACTCCTTGGTCTGCTGCCCTCTAATTGCCAGTgatctgtttaatttaaatataaactctATAAGCAGTGTCCCTAACAGTGTTAGTGGGGTATTAAAAGGATCTGAAGTAGAAAAGGGGTGTTACAATACACAACACTCACAAGGTAACAGATATCCTGCATTTCTGTTATGCCGGACATGACTTTAACGACTGGCCACTGACTGGTTTTGGAGCAGATGGTGATATTGGACAACTCCAATTCTTTAATTTGGAATGAATGCATCTGCCCACTACttctcttttaatattttaaaatatctatatcttttgttttcctttggtGTATTCATCATTAAATGGGTGGATCATAGAAACTCATATAGCTTAGAATTCTCTACCTTAgtatattaaagaaaattattatttgaagattattgtacatttataataGGATACAGAGATCTTGTGCTGTAGACAGCTTTGCATTCCAGTTTCTTGCACTGTTTATCTATAATCATTTCAACATTTGTATAATCCACctagtttaattgaattaaacctGAAAAGTGAAATTTCTTCCCCCATTTCTCATAGTCTGCATTAGaatcaacaacagaaaacaaagaatgcCCACGCTAAAGGTAAAAACAGCAGTGCACAGTCACCAATAAGACACAGTGCAAAAAGTAACACTAATGATCACCAGGGCAGGGTAGACCTCCATTTCAGTTTCCCATCGACTTCTCAAGTGACAGACACTAGTCAATAAATACACTGTTAAAAACTCAATAAATactcttctctccctctgatGCAGACATGAAGCAGGCCTTGTCAGAGAATAGCTCGCAGTTTTACAAGCAAAGATGCATACAGTTTTAGGTTTTTTCCCCCAACACTGCAAAGAATGAGCTCCAATCTGTATATAATGTTCTGTAAGTTCATTTGTAAATTCATCAACATTAATTCAAATCCCTCAGTTTGTGGACATTGAGGATTTGTAAAAGAATTATGATGctttacacatttttgtgtttttcagcagAGATCTCAGTGCTCTACAGAAAGGACATTTCTGATGATCACTCAAAGGAGGagaatcattatttaaattaaattaaaatacagcaatacCATTATAAAAGCTCATGGATGGTTCACCATTCTCTCAGATCACTTTTCTaagattttcacatttcatcactTACTCTTTACCTTATAACATTAGCTGAAaccttttacacattttctattttccatCATACCCATACCCTTCCTAAACTACCTTTATTATAGAAGTCAACAAGCAAGCTGGAGTTCTCATTATTTTGCAAGTAATCCAAGTCTTTCACATTTATACAGACCTCTCCTGTTTGGACATGcacaatttacacacacacacacacacaaatcaaactTCTCATACTGGTATTGTAGTGTTCAAAATTTGctgagaaaaaatacaacataaaaaagataacaccaacaaaaatgaatggttacatggattttagtttttcaccTGAAAATCTAATATTCCCTGGAATAAAGcctttacaaatattttgagattttcCATAAACTCTTGTAGCAACACAATTGCCAGCATCATCTAGTGCACACATTCCAGGACAGTGCATGACACAAGCCTTCCTTAAACTACGTGTTGGACTGCTTTGATATGCAAAAATTGAACGTGAACCTGGAGAGTCTATAATCCTAGGTGATTTAAGTACTGAGCTGGC

Function

GO:

id name namespace
GO:0044237 cellular metabolic process biological_process
GO:0016020 membrane cellular_component
GO:0005739 mitochondrion cellular_component
GO:0016773 phosphotransferase activity, alcohol group as acceptor molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016301 kinase activity molecular_function

KEGG:

id description
K09881 AGK; acylglycerol kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142052 lncRNA downstream 70428 25866385 ~ 25867279 (-) True G113431
TU142000 lncRNA downstream 191722 25741068 ~ 25745985 (-) True G113395
TU142003 lncRNA downstream 192217 25741068 ~ 25745490 (-) False G113395
TU141998 lncRNA downstream 198840 25738554 ~ 25738867 (-) True G113393
TU141995 lncRNA downstream 218132 25719362 ~ 25719575 (-) True G113391
TU142099 lncRNA upstream 46514 25995641 ~ 25995929 (-) True G113468
TU142110 lncRNA upstream 52319 26001446 ~ 26038323 (-) True G113479
TU142114 lncRNA upstream 52319 26001446 ~ 26010499 (-) False G113479
TU142233 lncRNA upstream 1110242 27059369 ~ 27059594 (-) True G113573
TU142246 lncRNA upstream 1206408 27155535 ~ 27155857 (-) True G113586
AMCG00006919 mRNA downstream 26125 25899551 ~ 25911582 (-) True AMCG00006919
AMCG00006920 mRNA downstream 44627 25888257 ~ 25893080 (-) True AMCG00006920
AMCG00006915 mRNA downstream 90222 25838755 ~ 25847485 (-) True AMCG00006915
AMCG00006914 mRNA downstream 159089 25747136 ~ 25778618 (-) True AMCG00006914
AMCG00006913 mRNA downstream 201826 25725239 ~ 25735881 (-) True AMCG00006913
AMCG00006922 mRNA upstream 27363 25976490 ~ 25993105 (-) True AMCG00006922
AMCG00006923 mRNA upstream 143770 26092897 ~ 26105386 (-) True AMCG00006923
AMCG00006925 mRNA upstream 185044 26134171 ~ 26140819 (-) True AMCG00006925
AMCG00006924 mRNA upstream 235124 26184251 ~ 26185762 (-) True AMCG00006924
AMCG00006926 mRNA upstream 243262 26192389 ~ 26361451 (-) True AMCG00006926
TU141596 other downstream 2530500 23404175 ~ 23407207 (-) True G113050
TU140946 other downstream 4987871 20854057 ~ 20949836 (-) False AMCG00006813
TU140776 other downstream 5701501 20235856 ~ 20236206 (-) True G112420
TU140642 other downstream 6301782 19633237 ~ 19635925 (-) False AMCG00006774
TU140430 other downstream 7596497 18339270 ~ 18341210 (-) False AMCG00006754
TU142176 other upstream 550888 26500015 ~ 26500681 (-) True G113530
TU142323 other upstream 1453473 27402600 ~ 27527348 (-) True G113645
TU142485 other upstream 2318135 28267262 ~ 28292598 (-) False G113775
TU142484 other upstream 2342328 28291455 ~ 28292598 (-) True G113775
TU142549 other upstream 2762092 28711219 ~ 28812548 (-) True G113833

Expression Profile